Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR4502-201ENST00000580432 81 ntBASIC5.52□□□□□ -1.53
SDC1P18827 MIR5010-201ENST00000582846 120 ntBASIC5.52□□□□□ -1.53
SDC1P18827 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SDC1P18827 NANOGP3-201ENST00000605855 286 ntBASIC5.52□□□□□ -1.53
SDC1P18827 AL353729.2-201ENST00000605859 1249 ntBASIC5.52□□□□□ -1.53
SDC1P18827 AL035661.1-201ENST00000620459 1144 ntBASIC5.52□□□□□ -1.53
SDC1P18827 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.52□□□□□ -1.53
SDC1P18827 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SDC1P18827 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.52□□□□□ -1.53
SDC1P18827 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.52□□□□□ -1.53
SDC1P18827 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
SDC1P18827 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
SDC1P18827 AC009962.1-201ENST00000567327 3813 ntBASIC5.52□□□□□ -1.53
SDC1P18827 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
SDC1P18827 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
SDC1P18827 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.51□□□□□ -1.53
SDC1P18827 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
SDC1P18827 AC117409.1-201ENST00000470499 1310 ntBASIC5.51□□□□□ -1.53
SDC1P18827 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.51□□□□□ -1.53
SDC1P18827 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.51□□□□□ -1.53
SDC1P18827 RNFT1P3-201ENST00000340898 1052 ntBASIC5.51□□□□□ -1.53
SDC1P18827 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 RNA5SP232-201ENST00000364144 119 ntBASIC5.51□□□□□ -1.53
SDC1P18827 RN7SKP171-201ENST00000364417 303 ntBASIC5.51□□□□□ -1.53
SDC1P18827 RN7SKP186-201ENST00000365371 303 ntBASIC5.51□□□□□ -1.53
SDC1P18827 RNU1-136P-201ENST00000384181 164 ntBASIC5.51□□□□□ -1.53
SDC1P18827 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC5.51□□□□□ -1.53
SDC1P18827 RNGTTP1-201ENST00000420965 728 ntBASIC5.51□□□□□ -1.53
SDC1P18827 KATNBL1P2-201ENST00000433311 835 ntBASIC5.51□□□□□ -1.53
SDC1P18827 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.51□□□□□ -1.53
SDC1P18827 AL354893.1-201ENST00000433735 348 ntBASIC5.51□□□□□ -1.53
SDC1P18827 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.51□□□□□ -1.53
SDC1P18827 AL590399.4-201ENST00000436561 601 ntBASIC5.51□□□□□ -1.53
SDC1P18827 OR7E116P-201ENST00000448529 957 ntBASIC5.51□□□□□ -1.53
SDC1P18827 AC009963.4-201ENST00000448535 339 ntBASIC5.51□□□□□ -1.53
SDC1P18827 RPS23P9-201ENST00000448848 438 ntBASIC5.51□□□□□ -1.53
SDC1P18827 CFL1P4-201ENST00000451536 498 ntBASIC5.51□□□□□ -1.53
SDC1P18827 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.51□□□□□ -1.53
SDC1P18827 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.51□□□□□ -1.53
SDC1P18827 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.51□□□□□ -1.53
SDC1P18827 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC5.51□□□□□ -1.53
SDC1P18827 AP000619.2-201ENST00000546014 969 ntBASIC5.51□□□□□ -1.53
SDC1P18827 AC084824.2-201ENST00000548906 345 ntBASIC5.51□□□□□ -1.53
SDC1P18827 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
SDC1P18827 MIR4776-2-201ENST00000580204 80 ntBASIC5.51□□□□□ -1.53
SDC1P18827 AC090236.2-201ENST00000587933 1101 ntBASIC5.51□□□□□ -1.53
SDC1P18827 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.51□□□□□ -1.53
SDC1P18827 AC108673.3-201ENST00000609183 335 ntBASIC5.51□□□□□ -1.53
SDC1P18827 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.51□□□□□ -1.53
SDC1P18827 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
SDC1P18827 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
SDC1P18827 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
SDC1P18827 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
SDC1P18827 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SDC1P18827 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.51□□□□□ -1.53
SDC1P18827 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SDC1P18827 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SDC1P18827 AL137141.1-201ENST00000624622 4836 ntBASIC5.5□□□□□ -1.53
SDC1P18827 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
SDC1P18827 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.5□□□□□ -1.53
SDC1P18827 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.5□□□□□ -1.53
SDC1P18827 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 AC140134.1-201ENST00000511830 3544 ntBASIC5.5□□□□□ -1.53
SDC1P18827 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.5□□□□□ -1.53
SDC1P18827 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.5□□□□□ -1.53
SDC1P18827 RNU6-316P-201ENST00000391027 107 ntBASIC5.5□□□□□ -1.53
SDC1P18827 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.5□□□□□ -1.53
SDC1P18827 RN7SKP29-201ENST00000410957 272 ntBASIC5.5□□□□□ -1.53
SDC1P18827 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC5.5□□□□□ -1.53
SDC1P18827 AC019205.1-201ENST00000421830 730 ntBASIC5.5□□□□□ -1.53
SDC1P18827 OR5W1P-201ENST00000423705 938 ntBASIC5.5□□□□□ -1.53
SDC1P18827 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.5□□□□□ -1.53
SDC1P18827 BX276092.6-201ENST00000430476 250 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms