Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SHOX2O60902 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.83□□□□□ -1.48
SHOX2O60902 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SHOX2O60902 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.83□□□□□ -1.48
SHOX2O60902 AC068870.3-201ENST00000625077 2536 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.82□□□□□ -1.48
SHOX2O60902 AC004023.1-201ENST00000561473 1744 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SHOX2O60902 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 RBMY1HP-201ENST00000382759 1389 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AC027088.4-201ENST00000611559 1947 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SHOX2O60902 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
SHOX2O60902 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SHOX2O60902 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 MIR138-2-201ENST00000384916 84 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 CDC42P6-201ENST00000421246 576 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AC099677.3-201ENST00000427081 395 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 MGAT2P2-201ENST00000427194 797 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 PCBP2P1-201ENST00000437262 977 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 EIF5AP4-201ENST00000441206 465 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 POU5F1P5-201ENST00000445059 658 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SHOX2O60902 AC104164.1-201ENST00000460282 590 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AC018638.3-201ENST00000461273 132 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 RN7SL655P-201ENST00000486087 298 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AL049874.2-201ENST00000492636 288 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 AC093664.1-201ENST00000511779 289 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 RNA5SP434-201ENST00000516647 121 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 RN7SKP64-201ENST00000517206 328 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.82□□□□□ -1.48
SHOX2O60902 OR4A42P-201ENST00000531397 938 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AC089984.3-201ENST00000552838 363 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 MTCYBP13-201ENST00000578634 1093 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC5.82□□□□□ -1.48
SHOX2O60902 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.82□□□□□ -1.48
SHOX2O60902 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
SHOX2O60902 MBD5-221ENST00000637159 902 ntTSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 AL596275.2-207ENST00000641188 675 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.82□□□□□ -1.48
SHOX2O60902 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SHOX2O60902 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SHOX2O60902 AC009220.2-201ENST00000489759 1751 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.82□□□□□ -1.48
SHOX2O60902 AL731532.2-201ENST00000623542 1953 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SHOX2O60902 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.82□□□□□ -1.48
SHOX2O60902 FANCD2P2-201ENST00000437591 1400 ntBASIC5.82□□□□□ -1.48
SHOX2O60902 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHOX2O60902 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHOX2O60902 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHOX2O60902 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHOX2O60902 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SHOX2O60902 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SHOX2O60902 AC092681.1-201ENST00000297369 291 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SHOX2O60902 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.81□□□□□ -1.48
SHOX2O60902 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SHOX2O60902 MIR551B-201ENST00000384984 96 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SHOX2O60902 AL353133.1-201ENST00000407695 401 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 RN7SKP205-201ENST00000410999 307 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC5.81□□□□□ -1.48
SHOX2O60902 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC5.81□□□□□ -1.48
SHOX2O60902 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC5.81□□□□□ -1.48
SHOX2O60902 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC5.81□□□□□ -1.48
SHOX2O60902 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.81□□□□□ -1.48
SHOX2O60902 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.81□□□□□ -1.48
SHOX2O60902 KHDC1P1-201ENST00000511053 508 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 AC113191.1-201ENST00000517759 403 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 AC130364.2-201ENST00000528639 604 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.81□□□□□ -1.48
SHOX2O60902 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.81□□□□□ -1.48
SHOX2O60902 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC5.81□□□□□ -1.48
SHOX2O60902 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.81□□□□□ -1.48
SHOX2O60902 RN7SL753P-201ENST00000581238 290 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 SETP3-201ENST00000581726 813 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 AC009237.13-201ENST00000603193 276 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.81□□□□□ -1.48
SHOX2O60902 MIR6849-201ENST00000618543 69 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 AC091932.2-201ENST00000623014 291 ntBASIC5.81□□□□□ -1.48
SHOX2O60902 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SHOX2O60902 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SHOX2O60902 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.81□□□□□ -1.48
SHOX2O60902 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SHOX2O60902 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms