Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC5.34□□□□□ -1.55
LMX1BO60663 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 RNA5SP375-201ENST00000362975 119 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 RNU1-49P-201ENST00000363468 159 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 RNA5SP510-201ENST00000364697 99 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
LMX1BO60663 MT-RNR1-201ENST00000389680 954 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
LMX1BO60663 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.34□□□□□ -1.55
LMX1BO60663 RPS3P2-201ENST00000421346 701 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 IGLV3-4-201ENST00000432300 244 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 AC112492.2-201ENST00000432774 1030 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 AL731534.1-201ENST00000434711 269 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 AL391987.1-201ENST00000441025 200 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.34□□□□□ -1.55
LMX1BO60663 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC025181.1-201ENST00000477507 416 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 AC114728.1-201ENST00000488289 483 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 LSM3P4-201ENST00000502948 309 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.34□□□□□ -1.55
LMX1BO60663 TRIM77BP-201ENST00000524985 1119 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 NANOGNBP2-201ENST00000544753 553 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.34□□□□□ -1.55
LMX1BO60663 CYCSP38-201ENST00000559840 322 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC008507.3-201ENST00000585753 472 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.34□□□□□ -1.55
LMX1BO60663 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC011445.2-201ENST00000599274 173 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 AC015849.6-201ENST00000605454 474 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC092681.3-201ENST00000609463 678 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.34□□□□□ -1.55
LMX1BO60663 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.34□□□□□ -1.55
LMX1BO60663 AC010998.3-201ENST00000613871 631 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
LMX1BO60663 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.34□□□□□ -1.55
LMX1BO60663 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.34□□□□□ -1.55
LMX1BO60663 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
LMX1BO60663 SNX18P3-202ENST00000565670 1750 ntBASIC5.34□□□□□ -1.56
LMX1BO60663 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.34□□□□□ -1.56
LMX1BO60663 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.34□□□□□ -1.56
LMX1BO60663 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 AC018717.1-201ENST00000457712 1505 ntBASIC5.33□□□□□ -1.56
LMX1BO60663 MTCO1P28-201ENST00000574177 1528 ntBASIC5.33□□□□□ -1.56
LMX1BO60663 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.33□□□□□ -1.56
LMX1BO60663 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.33□□□□□ -1.56
LMX1BO60663 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
LMX1BO60663 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.33□□□□□ -1.56
LMX1BO60663 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
LMX1BO60663 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 EIF3EP1-201ENST00000433978 1316 ntBASIC5.33□□□□□ -1.56
LMX1BO60663 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LMX1BO60663 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
LMX1BO60663 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
LMX1BO60663 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.33□□□□□ -1.56
LMX1BO60663 AC016769.2-201ENST00000414815 475 ntBASIC5.33□□□□□ -1.56
LMX1BO60663 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.33□□□□□ -1.56
LMX1BO60663 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.33□□□□□ -1.56
LMX1BO60663 RPL17P35-201ENST00000432217 549 ntBASIC5.33□□□□□ -1.56
LMX1BO60663 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC5.33□□□□□ -1.56
LMX1BO60663 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.33□□□□□ -1.56
LMX1BO60663 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.33□□□□□ -1.56
LMX1BO60663 AC114878.1-201ENST00000441166 358 ntBASIC5.33□□□□□ -1.56
LMX1BO60663 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.33□□□□□ -1.56
LMX1BO60663 RPL12P31-201ENST00000478433 450 ntBASIC5.33□□□□□ -1.56
LMX1BO60663 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.33□□□□□ -1.56
LMX1BO60663 OR4D12P-201ENST00000509361 911 ntBASIC5.33□□□□□ -1.56
LMX1BO60663 AC106806.2-201ENST00000509365 500 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms