Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM38O00635 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
TRIM38O00635 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
TRIM38O00635 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM38O00635 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM38O00635 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM38O00635 AP001002.1-201ENST00000625148 1513 ntBASIC6.34□□□□□ -1.39
TRIM38O00635 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM38O00635 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC6.34□□□□□ -1.4
TRIM38O00635 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.34□□□□□ -1.4
TRIM38O00635 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
TRIM38O00635 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
TRIM38O00635 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 AC011369.2-201ENST00000624423 1567 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 SNORD115-48-201ENST00000364764 76 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 AL139805.1-201ENST00000407837 289 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 MTND4P24-201ENST00000424002 397 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC007563.3-201ENST00000433233 371 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM38O00635 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC009237.1-201ENST00000442127 744 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 CXCR2P1-202ENST00000443392 1074 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 AC010240.2-201ENST00000445363 1205 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC118282.1-201ENST00000506408 765 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.33□□□□□ -1.4
TRIM38O00635 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 AC067904.2-201ENST00000517322 1283 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM38O00635 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM38O00635 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 AP001804.2-201ENST00000533932 910 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM38O00635 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC098483.2-201ENST00000603158 454 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 AC025171.4-201ENST00000607250 1047 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 AL352984.2-202ENST00000613699 155 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 AC079298.2-201ENST00000623885 459 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 AC004777.1-201ENST00000624317 287 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 AC008691.1-209ENST00000642094 814 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 AC011503.2-201ENST00000594230 1500 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 AC017002.4-201ENST00000604721 1525 ntBASIC6.33□□□□□ -1.4
TRIM38O00635 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM38O00635 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.33□□□□□ -1.4
TRIM38O00635 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM38O00635 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM38O00635 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM38O00635 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.32□□□□□ -1.4
TRIM38O00635 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM38O00635 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM38O00635 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM38O00635 NEK2P2-201ENST00000438441 1338 ntBASIC6.32□□□□□ -1.4
TRIM38O00635 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
TRIM38O00635 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM38O00635 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM38O00635 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
TRIM38O00635 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.32□□□□□ -1.4
TRIM38O00635 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM38O00635 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
TRIM38O00635 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
TRIM38O00635 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM38O00635 AC004386.1-201ENST00000393214 761 ntBASIC6.32□□□□□ -1.4
TRIM38O00635 RN7SKP161-201ENST00000411110 305 ntBASIC6.32□□□□□ -1.4
TRIM38O00635 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC6.32□□□□□ -1.4
TRIM38O00635 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM38O00635 AC019205.1-201ENST00000421830 730 ntBASIC6.32□□□□□ -1.4
TRIM38O00635 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms