Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 FO393419.3-201ENST00000428741 282 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CTBP2P1-201ENST00000431853 245 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 RPE-207ENST00000435437 858 ntTSL 2 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 FAM103A2P-201ENST00000444122 354 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 IFNWP5-201ENST00000445100 588 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 LINC01713-201ENST00000445589 932 ntTSL 3 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 HIGD1AP16-201ENST00000450986 258 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 DNAJB5P1-201ENST00000454004 806 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC110994.1-201ENST00000468519 406 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 RPL12P20-201ENST00000475538 479 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 RPS4XP17-201ENST00000479057 754 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 HMGB3P17-201ENST00000504195 649 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC138409.2-202ENST00000507274 458 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 RNY4P37-201ENST00000516225 96 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC138356.2-201ENST00000521192 667 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC048383.1-201ENST00000558226 527 ntTSL 4 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC026464.5-201ENST00000562497 722 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC024270.3-201ENST00000565513 396 ntTSL 3 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC015674.1-201ENST00000578482 267 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AP001178.2-201ENST00000580007 326 ntTSL 3 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 RMST_9.1-201ENST00000619945 193 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 MIR6834-201ENST00000622807 81 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AL049833.3-201ENST00000623920 3738 ntBASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 GTF2H2-201ENST00000274400 4336 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 NDE1-202ENST00000396355 3936 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 GC-201ENST00000273951 1972 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 CCDC129-202ENST00000407970 3269 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
VPS9D1Q9Y2B5 AC100756.3-201ENST00000618455 1816 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AL591848.3-201ENST00000570141 2968 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 KNG1-202ENST00000287611 1720 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 NLRP3-206ENST00000391828 3853 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 CCDC149-204ENST00000504487 3869 ntAPPRIS ALT2 TSL 2 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC073349.2-201ENST00000427545 1603 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 RBM46-202ENST00000510397 3626 ntTSL 2 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 CASC19-205ENST00000641013 1411 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 TTC21A-205ENST00000440121 3941 ntAPPRIS P3 TSL 2 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 NOLC1-209ENST00000605788 3932 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 CELF1-215ENST00000532048 3044 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 MIR425-201ENST00000362162 87 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 RNU6-223P-201ENST00000362830 107 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 RNU6-282P-201ENST00000365357 103 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 PAGE5-202ENST00000374952 428 ntTSL 5 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 RNU6-809P-201ENST00000384461 107 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 MTCYBP4-201ENST00000401524 249 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 NPM1P38-201ENST00000403835 865 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 DPY19L1P2-201ENST00000426647 915 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC245014.1-201ENST00000427732 381 ntTSL 5 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 ATP5JP1-201ENST00000431631 322 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 ZNF341-AS1-203ENST00000443171 642 ntTSL 2 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC090954.1-201ENST00000445502 361 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 RN7SL337P-201ENST00000462468 301 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 RN7SL302P-201ENST00000475999 300 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC099521.1-201ENST00000482557 334 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 HNRNPA1P44-201ENST00000503999 879 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 NMNAT1P4-201ENST00000505598 840 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC079140.5-201ENST00000507882 310 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 SNCA-211ENST00000508895 905 ntAPPRIS P1 TSL 3 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC112192.1-201ENST00000515086 553 ntTSL 4 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 IGHVII-26-2-201ENST00000518751 325 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AL121594.2-201ENST00000541658 472 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC074032.1-202ENST00000552815 467 ntTSL 3 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AL352979.1-201ENST00000554238 297 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 LINC00520-204ENST00000556417 778 ntTSL 3 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC026458.2-201ENST00000589323 531 ntTSL 5 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC010525.2-201ENST00000590920 195 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 ELOF1-207ENST00000591674 679 ntTSL 2 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 MRPS5P4-201ENST00000592830 325 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 ZSCAN30-210ENST00000601405 510 ntTSL 5 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AL590705.1-201ENST00000607322 484 ntTSL 4 BASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 AL161734.1-201ENST00000609720 557 ntBASIC8.4□□□□□ -1.06
VPS9D1Q9Y2B5 SNCA-212ENST00000611107 297 ntTSL 5 BASIC8.4□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms