Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC11.18□□□□□ -0.62
SHROOM4Q9ULL8 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SHROOM4Q9ULL8 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
SHROOM4Q9ULL8 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC11.18□□□□□ -0.62
SHROOM4Q9ULL8 OLMALINC-203ENST00000641087 3779 ntBASIC11.18□□□□□ -0.62
SHROOM4Q9ULL8 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
SHROOM4Q9ULL8 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC11.18□□□□□ -0.62
SHROOM4Q9ULL8 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SHROOM4Q9ULL8 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 U8.4-201ENST00000363626 134 ntBASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 AL049634.1-201ENST00000453770 1720 ntBASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 RPL35AP19-201ENST00000469425 329 ntBASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 AC004453.1-201ENST00000487895 408 ntBASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 OR51K1P-201ENST00000510214 950 ntBASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 AC073581.1-201ENST00000519036 575 ntBASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 AC087269.2-201ENST00000641764 975 ntBASIC11.17□□□□□ -0.62
SHROOM4Q9ULL8 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 NBPF8-201ENST00000583271 5330 ntBASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 AC009831.5-201ENST00000624000 3189 ntBASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 AC005034.3-201ENST00000604845 1747 ntBASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 OR6E1P-201ENST00000414424 923 ntBASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 AC067852.5-201ENST00000589299 310 ntBASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SHROOM4Q9ULL8 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 U3.2-201ENST00000362981 210 ntBASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 SNORA43.3-201ENST00000517240 103 ntBASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 AL049872.1-201ENST00000556323 322 ntBASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 GARSP1-201ENST00000570895 719 ntBASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 AC012557.1-201ENST00000607115 611 ntBASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 RAD17P2-201ENST00000451754 1977 ntBASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
SHROOM4Q9ULL8 AC018809.2-201ENST00000602436 3823 ntBASIC11.15□□□□□ -0.63
SHROOM4Q9ULL8 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 OR8G3P-201ENST00000533406 921 ntBASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 AC027334.1-201ENST00000603257 310 ntBASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 AC009950.2-201ENST00000636548 183 ntBASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
SHROOM4Q9ULL8 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 FAR2P2-201ENST00000413041 594 ntBASIC11.13□□□□□ -0.63
SHROOM4Q9ULL8 RPS4XP5-201ENST00000419038 768 ntBASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms