Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 DDX18P6-201ENST00000450119 1997 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AP005139.1-201ENST00000580702 1647 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 SNORA70.3-201ENST00000365075 132 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AL353133.1-201ENST00000407695 401 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AL663061.1-201ENST00000416625 580 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 SPATA20P1-201ENST00000423089 438 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 OR5W1P-201ENST00000423705 938 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 RPS4XP16-201ENST00000427198 791 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC093716.1-201ENST00000435923 377 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 SNRPBP1-201ENST00000443634 282 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AL121578.2-201ENST00000448797 447 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 PPIAP32-201ENST00000449940 472 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 RPL31P11-202ENST00000454082 372 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 VN1R40P-201ENST00000455196 941 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 RPL7P45-201ENST00000455851 743 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 NREP-223ENST00000515855 801 ntTSL 4 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 SNRPCP6-201ENST00000528310 210 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 EMP1-206ENST00000537612 505 ntTSL 3 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC023050.2-201ENST00000544968 387 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC027796.1-201ENST00000575593 512 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 RN7SL199P-201ENST00000578752 281 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 RN7SL656P-201ENST00000579044 281 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 RN7SL404P-201ENST00000582421 281 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC005377.1-201ENST00000605126 456 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 RNU6-84P-201ENST00000607737 102 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AL159169.2-201ENST00000610061 1269 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC013470.4-201ENST00000619978 986 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC123767.1-202ENST00000620407 817 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC005899.6-201ENST00000620729 297 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC006328.2-201ENST00000623198 397 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC010435.1-201ENST00000623353 1177 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AC012005.2-201ENST00000624333 397 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AL357140.4-201ENST00000636827 412 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 Z97989.1-201ENST00000531702 2421 ntBASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.7□□□□□ -1.34
TRIM39Q9HCM9 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC079949.2-201ENST00000617117 2933 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 PPCS-201ENST00000372556 984 ntTSL 2 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 NOX1-203ENST00000372964 661 ntTSL 2 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 SNORD116-12-201ENST00000384468 92 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 MIR142-201ENST00000384835 87 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 MIR640-201ENST00000385086 96 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 NACAP7-201ENST00000407371 609 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 RNU4-22P-201ENST00000411058 166 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC017035.1-201ENST00000411999 1115 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 RPS3AP37-201ENST00000419176 745 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC239367.3-201ENST00000428996 814 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 PTGES3P1-201ENST00000439531 483 ntBASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms