Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.49□□□□□ -1.37
CCDC112Q8NEF3 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC112Q8NEF3 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC112Q8NEF3 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC112Q8NEF3 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
CCDC112Q8NEF3 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC112Q8NEF3 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AL136231.1-201ENST00000429407 730 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 OR6R1P-201ENST00000431838 940 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 OR3D1P-201ENST00000438288 955 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 POU5F1P5-201ENST00000445059 658 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AC093166.3-201ENST00000448785 303 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 CTSLP6-201ENST00000458273 1002 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 PFN1P6-201ENST00000476786 399 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AL359219.2-201ENST00000555184 348 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 uc_338.26-201ENST00000612659 160 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AC022106.1-201ENST00000612834 766 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AP001052.1-201ENST00000626421 99 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 TEX41-271ENST00000628213 993 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 AC011933.2-201ENST00000578539 2790 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 FGG-201ENST00000336098 1659 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 GVINP1-202ENST00000531871 7271 ntBASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC6.48□□□□□ -1.37
CCDC112Q8NEF3 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 OR9K1P-202ENST00000641111 3217 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 RNA5SP232-201ENST00000364144 119 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 RNA5SP85-201ENST00000365378 119 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 PSMA6P1-201ENST00000400275 741 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 PRELID1P1-201ENST00000403549 660 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 RN7SKP86-201ENST00000410454 332 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 NMD3P2-201ENST00000421815 761 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 RPS23P9-201ENST00000448848 438 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 AL133351.3-201ENST00000454998 193 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 MORF4L2P1-201ENST00000503761 858 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 OR51A1P-201ENST00000511110 946 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 OR56A7P-201ENST00000524865 941 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 OR4A42P-201ENST00000531397 938 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 AC012676.3-201ENST00000614983 479 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 AL157762.1-201ENST00000619612 415 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 AC073593.1-201ENST00000624500 411 ntBASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC112Q8NEF3 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
CCDC112Q8NEF3 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
CCDC112Q8NEF3 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
CCDC112Q8NEF3 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.46□□□□□ -1.37
CCDC112Q8NEF3 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.37
CCDC112Q8NEF3 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 RN7SKP171-201ENST00000364417 303 ntBASIC6.46□□□□□ -1.38
CCDC112Q8NEF3 RNA5SP485-201ENST00000365053 119 ntBASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms