Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX2P35548 AC124283.4-201ENST00000581815 456 ntBASIC6.23□□□□□ -1.41
MSX2P35548 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX2P35548 AL356986.1-201ENST00000604085 341 ntBASIC6.23□□□□□ -1.41
MSX2P35548 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 AC004241.2-201ENST00000614562 444 ntBASIC6.23□□□□□ -1.41
MSX2P35548 MRPL57P1-201ENST00000621486 265 ntBASIC6.23□□□□□ -1.41
MSX2P35548 CCNT1-206ENST00000640148 596 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 OR7A1P-202ENST00000641542 1158 ntBASIC6.23□□□□□ -1.41
MSX2P35548 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX2P35548 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX2P35548 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX2P35548 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
MSX2P35548 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.23□□□□□ -1.41
MSX2P35548 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 ICE2P1-201ENST00000512800 1849 ntBASIC6.22□□□□□ -1.41
MSX2P35548 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX2P35548 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.22□□□□□ -1.41
MSX2P35548 RAD1P1-201ENST00000231383 813 ntBASIC6.22□□□□□ -1.41
MSX2P35548 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
MSX2P35548 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 AL050335.1-201ENST00000396909 869 ntBASIC6.22□□□□□ -1.41
MSX2P35548 RN7SKP236-201ENST00000410635 284 ntBASIC6.22□□□□□ -1.41
MSX2P35548 AC006547.2-201ENST00000412713 526 ntTSL 4 BASIC6.22□□□□□ -1.41
MSX2P35548 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX2P35548 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX2P35548 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 AL590128.1-201ENST00000433407 286 ntBASIC6.22□□□□□ -1.41
MSX2P35548 LINC01747-201ENST00000437696 1067 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 AC019185.3-201ENST00000438805 323 ntBASIC6.22□□□□□ -1.41
MSX2P35548 BX679664.2-201ENST00000439282 283 ntBASIC6.22□□□□□ -1.41
MSX2P35548 ELOCP30-201ENST00000447108 299 ntBASIC6.22□□□□□ -1.41
MSX2P35548 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX2P35548 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX2P35548 DLG5-AS1-201ENST00000449852 487 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 AC019080.2-201ENST00000453859 394 ntBASIC6.22□□□□□ -1.41
MSX2P35548 MED28P7-201ENST00000456611 530 ntBASIC6.22□□□□□ -1.41
MSX2P35548 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC6.22□□□□□ -1.41
MSX2P35548 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX2P35548 AC126615.1-201ENST00000470084 630 ntBASIC6.22□□□□□ -1.41
MSX2P35548 CYCSP20-201ENST00000473154 315 ntBASIC6.22□□□□□ -1.41
MSX2P35548 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 AC017007.1-201ENST00000511960 415 ntBASIC6.22□□□□□ -1.41
MSX2P35548 RN7SKP11-201ENST00000517018 287 ntBASIC6.22□□□□□ -1.41
MSX2P35548 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
MSX2P35548 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX2P35548 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX2P35548 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX2P35548 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX2P35548 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.22□□□□□ -1.41
MSX2P35548 KLRD1-210ENST00000543777 789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 AL049869.4-201ENST00000555669 178 ntBASIC6.22□□□□□ -1.41
MSX2P35548 AC009063.2-201ENST00000563981 906 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX2P35548 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 HULC.1-201ENST00000612720 240 ntBASIC6.22□□□□□ -1.41
MSX2P35548 AL392048.1-201ENST00000613946 534 ntBASIC6.22□□□□□ -1.41
MSX2P35548 AC244196.5-201ENST00000617347 406 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
MSX2P35548 AP001264.1-201ENST00000620602 703 ntBASIC6.22□□□□□ -1.41
MSX2P35548 AC093909.6-201ENST00000624757 775 ntBASIC6.22□□□□□ -1.41
MSX2P35548 AC092608.3-201ENST00000625017 386 ntBASIC6.22□□□□□ -1.41
MSX2P35548 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX2P35548 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC6.22□□□□□ -1.41
MSX2P35548 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.22□□□□□ -1.41
MSX2P35548 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 AC023245.2-201ENST00000530760 2978 ntBASIC6.22□□□□□ -1.41
MSX2P35548 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
MSX2P35548 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 KYNUP2-201ENST00000582280 1329 ntBASIC6.22□□□□□ -1.41
MSX2P35548 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX2P35548 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSX2P35548 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
MSX2P35548 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.21□□□□□ -1.41
MSX2P35548 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.41
MSX2P35548 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
MSX2P35548 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
MSX2P35548 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC6.21□□□□□ -1.41
MSX2P35548 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC6.21□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms