Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC7.08□□□□□ -1.28
COL5A3P25940 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC7.08□□□□□ -1.28
COL5A3P25940 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC7.08□□□□□ -1.28
COL5A3P25940 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.08□□□□□ -1.28
COL5A3P25940 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC7.08□□□□□ -1.28
COL5A3P25940 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC7.08□□□□□ -1.28
COL5A3P25940 MIR2117-201ENST00000516780 80 ntBASIC7.08□□□□□ -1.28
COL5A3P25940 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC7.08□□□□□ -1.28
COL5A3P25940 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC7.08□□□□□ -1.28
COL5A3P25940 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC7.08□□□□□ -1.28
COL5A3P25940 AC009163.6-201ENST00000612367 342 ntBASIC7.08□□□□□ -1.28
COL5A3P25940 ZNF101P1-201ENST00000435701 1720 ntBASIC7.08□□□□□ -1.28
COL5A3P25940 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC7.08□□□□□ -1.28
COL5A3P25940 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 AC006206.1-201ENST00000544842 3387 ntBASIC7.08□□□□□ -1.28
COL5A3P25940 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC7.08□□□□□ -1.28
COL5A3P25940 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
COL5A3P25940 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
COL5A3P25940 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL5A3P25940 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
COL5A3P25940 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
COL5A3P25940 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 AL121835.1-201ENST00000404250 354 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 MORF4L1P4-201ENST00000450245 976 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC7.07□□□□□ -1.28
COL5A3P25940 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 OR5AZ1P-201ENST00000527448 943 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 MIR4646-201ENST00000580775 63 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 AC006116.3-201ENST00000592968 361 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 AC087385.3-201ENST00000620477 187 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC7.07□□□□□ -1.28
COL5A3P25940 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC7.07□□□□□ -1.28
COL5A3P25940 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC7.07□□□□□ -1.28
COL5A3P25940 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 RNA5SP326-201ENST00000363209 110 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 RNVU1-6-201ENST00000364688 164 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 AL672138.1-201ENST00000450604 1015 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC7.07□□□□□ -1.28
COL5A3P25940 SNRPCP2-201ENST00000504370 475 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 AC013701.1-201ENST00000522657 465 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 AL163952.1-202ENST00000569625 600 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL5A3P25940 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 CYCSP1-201ENST00000604815 315 ntBASIC7.07□□□□□ -1.28
COL5A3P25940 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC7.07□□□□□ -1.28
COL5A3P25940 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC7.07□□□□□ -1.28
COL5A3P25940 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC7.06□□□□□ -1.28
COL5A3P25940 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC7.06□□□□□ -1.28
COL5A3P25940 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
COL5A3P25940 AC022034.1-201ENST00000512867 2156 ntBASIC7.06□□□□□ -1.28
COL5A3P25940 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
COL5A3P25940 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC7.06□□□□□ -1.28
COL5A3P25940 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
COL5A3P25940 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL5A3P25940 RNA5SP91-201ENST00000390902 119 ntBASIC7.06□□□□□ -1.28
COL5A3P25940 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
COL5A3P25940 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC7.06□□□□□ -1.28
COL5A3P25940 CEACAMP7-201ENST00000444105 496 ntBASIC7.06□□□□□ -1.28
COL5A3P25940 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC7.06□□□□□ -1.28
COL5A3P25940 RPS23P2-201ENST00000463671 415 ntBASIC7.06□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms