Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC7.14□□□□□ -1.27
COL6A1P12109 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC7.14□□□□□ -1.27
COL6A1P12109 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC7.14□□□□□ -1.27
COL6A1P12109 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 RNU6-1257P-201ENST00000384625 110 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 LSM5-203ENST00000409782 649 ntTSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 VN1R51P-201ENST00000411675 945 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 FTH1P10-202ENST00000430907 550 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 snoU109.3-201ENST00000459477 145 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 UBFD1P1-201ENST00000473259 814 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 RN7SL369P-201ENST00000477138 299 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 AC063943.2-201ENST00000495697 534 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC7.14□□□□□ -1.27
COL6A1P12109 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 RNA5SP438-201ENST00000516561 112 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 AC084824.2-201ENST00000548906 345 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC7.14□□□□□ -1.27
COL6A1P12109 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC7.14□□□□□ -1.27
COL6A1P12109 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC7.14□□□□□ -1.27
COL6A1P12109 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 AC120057.5-201ENST00000623840 154 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
COL6A1P12109 AC139792.2-201ENST00000624218 587 ntBASIC7.14□□□□□ -1.27
COL6A1P12109 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
COL6A1P12109 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
COL6A1P12109 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL6A1P12109 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
COL6A1P12109 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
COL6A1P12109 AL022393.1-201ENST00000625142 1677 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.13□□□□□ -1.27
COL6A1P12109 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
COL6A1P12109 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC7.13□□□□□ -1.27
COL6A1P12109 MSL3P1-202ENST00000440028 1468 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC7.13□□□□□ -1.27
COL6A1P12109 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 AC005261.6-201ENST00000623072 1387 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
COL6A1P12109 AL049697.3-201ENST00000406493 982 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 HSFY4P-201ENST00000415994 1181 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC7.13□□□□□ -1.27
COL6A1P12109 AC234781.4-201ENST00000419384 244 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL6A1P12109 RPL23AP85-201ENST00000421838 433 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AC115285.1-201ENST00000424879 736 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 ELOCP11-201ENST00000436690 332 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 TUBB4BP6-201ENST00000437576 479 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC7.13□□□□□ -1.27
COL6A1P12109 ELOCP16-201ENST00000444494 332 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC7.13□□□□□ -1.27
COL6A1P12109 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC7.13□□□□□ -1.27
COL6A1P12109 MORF4L1P4-201ENST00000450245 976 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AL133351.3-201ENST00000454998 193 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AL356390.1-201ENST00000455684 397 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AC005412.2-201ENST00000492004 341 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AL136038.1-201ENST00000497246 351 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 SSX6-203ENST00000509958 336 ntTSL 3 BASIC7.13□□□□□ -1.27
COL6A1P12109 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC7.13□□□□□ -1.27
COL6A1P12109 TMEM97P2-201ENST00000517841 403 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC7.13□□□□□ -1.27
COL6A1P12109 ZKSCAN7P1-201ENST00000543668 673 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC7.13□□□□□ -1.27
COL6A1P12109 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC7.13□□□□□ -1.27
COL6A1P12109 CSNK1A1P1-202ENST00000563423 981 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AC233266.2-201ENST00000567067 528 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
COL6A1P12109 PRELID3BP3-201ENST00000584963 545 ntBASIC7.13□□□□□ -1.27
COL6A1P12109 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC7.13□□□□□ -1.27
COL6A1P12109 AC068620.3-201ENST00000602749 560 ntBASIC7.13□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms