Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXD4P09016 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXD4P09016 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXD4P09016 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 SYT14P1-202ENST00000600441 1448 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXD4P09016 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXD4P09016 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXD4P09016 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXD4P09016 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
HOXD4P09016 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXD4P09016 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXD4P09016 MIR323A-201ENST00000362199 86 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
HOXD4P09016 RPL23AP17-201ENST00000401064 499 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 RNA5SP178-201ENST00000410380 128 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 U3.43-201ENST00000410734 213 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXD4P09016 AC245096.1-201ENST00000413104 546 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXD4P09016 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXD4P09016 RPL12P12-201ENST00000424633 501 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 BX119904.3-201ENST00000428194 957 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 TUBB4BP6-201ENST00000437576 479 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXD4P09016 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXD4P09016 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXD4P09016 ACA64.1-201ENST00000459171 127 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXD4P09016 AC114728.1-201ENST00000488289 483 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 RNA5SP434-201ENST00000516647 121 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXD4P09016 OR7E158P-201ENST00000524483 910 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 AC105036.1-201ENST00000566222 271 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 AC007066.2-202ENST00000566531 914 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXD4P09016 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXD4P09016 AC233702.7-202ENST00000582941 211 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXD4P09016 AC027243.2-201ENST00000602530 724 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 AC025857.2-201ENST00000602711 238 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.54□□□□□ -1.52
HOXD4P09016 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 AP002512.4-202ENST00000641599 4530 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.54□□□□□ -1.52
HOXD4P09016 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXD4P09016 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
HOXD4P09016 AL355488.2-201ENST00000609909 2850 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXD4P09016 CIR1P2-201ENST00000514821 1342 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXD4P09016 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
HOXD4P09016 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
HOXD4P09016 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXD4P09016 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXD4P09016 RNA5SP284-201ENST00000384547 118 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
HOXD4P09016 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
HOXD4P09016 SMC4P1-201ENST00000414479 527 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXD4P09016 MTND6P12-201ENST00000428247 522 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AC023141.3-201ENST00000436698 278 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXD4P09016 OR13K1P-201ENST00000444577 975 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AC005077.1-201ENST00000449226 375 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AC074386.1-201ENST00000476560 767 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 RN7SL284P-201ENST00000498823 275 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AL158068.1-201ENST00000506116 616 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.53□□□□□ -1.52
HOXD4P09016 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXD4P09016 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.53□□□□□ -1.52
HOXD4P09016 OR5H7P-201ENST00000514084 930 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 SCARNA18.1-201ENST00000516330 83 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 RNA5SP340-201ENST00000517132 107 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms