Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC005355.2-201ENST00000625064 484 ntBASIC5.85□□□□□ -1.47
SHOX2O60902 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.85□□□□□ -1.47
SHOX2O60902 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
SHOX2O60902 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.85□□□□□ -1.47
SHOX2O60902 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
SHOX2O60902 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.85□□□□□ -1.47
SHOX2O60902 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
SHOX2O60902 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SHOX2O60902 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.84□□□□□ -1.47
SHOX2O60902 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 RNA5SP308-201ENST00000362532 115 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 RNU1-84P-201ENST00000365447 164 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 SNORA7A-201ENST00000384765 139 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 RNA5SP241-201ENST00000391326 114 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 COX5BP7-201ENST00000414780 274 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.84□□□□□ -1.47
SHOX2O60902 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
SHOX2O60902 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.84□□□□□ -1.47
SHOX2O60902 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.84□□□□□ -1.47
SHOX2O60902 RPS12P17-201ENST00000438591 377 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 RPS10P14-201ENST00000440748 502 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.84□□□□□ -1.47
SHOX2O60902 RPL12P31-201ENST00000478433 450 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 AC016559.2-201ENST00000510759 359 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 MAST4-IT1-201ENST00000514241 658 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC5.84□□□□□ -1.47
SHOX2O60902 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.84□□□□□ -1.47
SHOX2O60902 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC5.84□□□□□ -1.47
SHOX2O60902 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC5.84□□□□□ -1.47
SHOX2O60902 RPL3P13-201ENST00000550415 216 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 AC090888.3-201ENST00000558917 509 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.84□□□□□ -1.47
SHOX2O60902 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC5.84□□□□□ -1.47
SHOX2O60902 RN7SL290P-201ENST00000578661 300 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 MIR378H-201ENST00000579966 83 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 AC100832.2-201ENST00000582080 776 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 MIR8082-201ENST00000612488 81 ntBASIC5.84□□□□□ -1.47
SHOX2O60902 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.84□□□□□ -1.47
SHOX2O60902 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SHOX2O60902 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.84□□□□□ -1.47
SHOX2O60902 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.48
SHOX2O60902 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.84□□□□□ -1.48
SHOX2O60902 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
SHOX2O60902 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.48
SHOX2O60902 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
SHOX2O60902 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.48
SHOX2O60902 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
SHOX2O60902 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SHOX2O60902 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
SHOX2O60902 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SHOX2O60902 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SHOX2O60902 AL139100.1-201ENST00000408001 498 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.83□□□□□ -1.48
SHOX2O60902 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC5.83□□□□□ -1.48
SHOX2O60902 PTPN2P1-201ENST00000423212 1072 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 AP003385.1-201ENST00000426387 893 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SHOX2O60902 SOCS5P1-201ENST00000440415 949 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 RPS7P4-201ENST00000444127 582 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 AL845321.1-201ENST00000444603 348 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 AL356133.1-201ENST00000444762 372 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC5.83□□□□□ -1.48
SHOX2O60902 PRPF38AP1-201ENST00000451976 933 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 AKR1D1P1-201ENST00000457236 936 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 AC019084.1-201ENST00000457337 432 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 TPT1P1-201ENST00000458495 518 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 RPS4XP12-201ENST00000461747 709 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 UBFD1P1-201ENST00000473259 814 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC5.83□□□□□ -1.48
SHOX2O60902 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC5.83□□□□□ -1.48
SHOX2O60902 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC5.83□□□□□ -1.48
SHOX2O60902 AC079064.1-201ENST00000528365 362 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC5.83□□□□□ -1.48
SHOX2O60902 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 AC127024.5-201ENST00000580085 462 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC5.83□□□□□ -1.48
SHOX2O60902 MIR6780B-201ENST00000610307 79 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 AC022106.1-201ENST00000612834 766 ntBASIC5.83□□□□□ -1.48
SHOX2O60902 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SHOX2O60902 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SHOX2O60902 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.83□□□□□ -1.48
SHOX2O60902 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 241.1 ms