Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 RN7SKP157-201ENST00000516174 282 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 SCARNA21.2-201ENST00000516600 166 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 AP001858.2-201ENST00000536213 601 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.36□□□□□ -1.55
LMX1BO60663 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.36□□□□□ -1.55
LMX1BO60663 AC008521.2-201ENST00000591021 259 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.36□□□□□ -1.55
LMX1BO60663 AC108865.2-201ENST00000606881 432 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 SNORA74.4-201ENST00000607595 199 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 AC021766.1-201ENST00000624404 741 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 AC022919.1-201ENST00000624979 626 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
LMX1BO60663 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 AC093225.1-201ENST00000506867 1408 ntBASIC5.36□□□□□ -1.55
LMX1BO60663 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
LMX1BO60663 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.36□□□□□ -1.55
LMX1BO60663 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LMX1BO60663 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.36□□□□□ -1.55
LMX1BO60663 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
LMX1BO60663 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.35□□□□□ -1.55
LMX1BO60663 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.35□□□□□ -1.55
LMX1BO60663 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 HSPD1P9-201ENST00000420325 1636 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 MTND4P21-201ENST00000453886 1357 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.35□□□□□ -1.55
LMX1BO60663 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 GNG5P2-201ENST00000372054 207 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 AL157702.1-201ENST00000398764 426 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 RN7SKP206-201ENST00000410823 293 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.35□□□□□ -1.55
LMX1BO60663 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 PNKDP1-201ENST00000435914 430 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 AL133351.3-201ENST00000454998 193 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 RPL12P30-201ENST00000488389 499 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 Y_RNA.710-201ENST00000516975 110 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC027369.2-201ENST00000528030 440 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC5.35□□□□□ -1.55
LMX1BO60663 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.35□□□□□ -1.55
LMX1BO60663 AC015802.5-201ENST00000607478 399 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 AC069234.4-201ENST00000621276 412 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 AC090506.2-201ENST00000624521 419 ntBASIC5.35□□□□□ -1.55
LMX1BO60663 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.35□□□□□ -1.55
LMX1BO60663 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
LMX1BO60663 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LMX1BO60663 MAPK10-261ENST00000641050 3109 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 KARSP1-201ENST00000451871 1752 ntBASIC5.34□□□□□ -1.55
LMX1BO60663 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.34□□□□□ -1.55
LMX1BO60663 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
LMX1BO60663 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
LMX1BO60663 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
LMX1BO60663 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms