Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 UBE2V1P1-201ENST00000430836 445 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 MAPRE1P3-201ENST00000435438 796 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AL390879.1-201ENST00000439143 386 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.6□□□□□ -1.35
USP39Q53GS9 MTND1P29-201ENST00000448112 647 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 snoU109.3-201ENST00000459477 145 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC6.6□□□□□ -1.35
USP39Q53GS9 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.6□□□□□ -1.35
USP39Q53GS9 GM2AP2-201ENST00000491764 562 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 H3F3AP3-201ENST00000497682 407 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AC020699.1-201ENST00000505161 445 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC6.6□□□□□ -1.35
USP39Q53GS9 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 AC011411.1-201ENST00000509592 876 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 HMGN1P17-201ENST00000513734 295 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 ZNF519P4-201ENST00000514008 125 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 SOX5P1-201ENST00000524155 1127 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.6□□□□□ -1.35
USP39Q53GS9 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.6□□□□□ -1.35
USP39Q53GS9 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AC090115.2-201ENST00000548060 883 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AC092375.1-201ENST00000550410 637 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AP003115.1-201ENST00000569849 463 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 RN7SL208P-201ENST00000577964 296 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 MTCO2P2-201ENST00000591258 225 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AC091768.1-201ENST00000609258 930 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 OR1N1-202ENST00000619659 939 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AC073862.4-201ENST00000622982 854 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 AKAP17BP-201ENST00000431706 2719 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 AC018717.1-201ENST00000457712 1505 ntBASIC6.6□□□□□ -1.35
USP39Q53GS9 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
USP39Q53GS9 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
USP39Q53GS9 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.59□□□□□ -1.35
USP39Q53GS9 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.59□□□□□ -1.35
USP39Q53GS9 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 MTND4P10-201ENST00000446199 1363 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC005261.2-201ENST00000593427 4258 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.59□□□□□ -1.35
USP39Q53GS9 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.59□□□□□ -1.35
USP39Q53GS9 CASC19-246ENST00000641625 1606 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 COX6B1P3-201ENST00000312310 260 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
USP39Q53GS9 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
USP39Q53GS9 RNA5SP65-201ENST00000363166 119 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 RNU6-819P-201ENST00000364116 107 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AL589655.1-201ENST00000405398 482 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 HIGD1AP15-201ENST00000416198 280 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AL713922.1-201ENST00000416477 747 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 RPL21P50-201ENST00000417698 477 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 UBE2D3P3-201ENST00000426992 425 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AC083862.1-201ENST00000427378 1242 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.59□□□□□ -1.35
USP39Q53GS9 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.59□□□□□ -1.35
USP39Q53GS9 RPS29P14-201ENST00000431518 171 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 KATNBL1P3-201ENST00000443475 909 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC6.59□□□□□ -1.35
USP39Q53GS9 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC6.59□□□□□ -1.35
USP39Q53GS9 MTND4P2-201ENST00000507767 1203 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.59□□□□□ -1.35
USP39Q53GS9 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
USP39Q53GS9 RNA5SP418-201ENST00000515951 117 ntBASIC6.59□□□□□ -1.35
USP39Q53GS9 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.59□□□□□ -1.35
USP39Q53GS9 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms