Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 AC117409.1-201ENST00000470499 1310 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
FOXA1P55317 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.57□□□□□ -1.52
FOXA1P55317 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
FOXA1P55317 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
FOXA1P55317 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 RNA5SP326-201ENST00000363209 110 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 RN7SKP171-201ENST00000364417 303 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.57□□□□□ -1.52
FOXA1P55317 MIR130A-201ENST00000385274 89 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
FOXA1P55317 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 AC016739.1-201ENST00000405359 345 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 RN7SKP86-201ENST00000410454 332 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AL357752.1-201ENST00000412817 349 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.57□□□□□ -1.52
FOXA1P55317 VN1R21P-201ENST00000426703 765 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 DEFA9P-201ENST00000433042 285 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
FOXA1P55317 AL354893.1-201ENST00000433735 348 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AC138761.5-201ENST00000433967 325 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 RBMY2AP-201ENST00000445405 1157 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 RBMY2CP-201ENST00000448575 1157 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 RBMY2DP-202ENST00000448881 1157 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 RBMY2BP-202ENST00000451071 1156 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AC044810.1-201ENST00000480271 711 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 RPS7P6-201ENST00000485777 579 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.57□□□□□ -1.52
FOXA1P55317 AC111000.6-201ENST00000514471 709 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AC139365.2-201ENST00000517972 253 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.57□□□□□ -1.52
FOXA1P55317 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC5.57□□□□□ -1.52
FOXA1P55317 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.57□□□□□ -1.52
FOXA1P55317 AC139697.1-201ENST00000548429 745 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AC084824.2-201ENST00000548906 345 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AL136131.3-201ENST00000607600 188 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AC108673.3-201ENST00000609183 335 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 AC092266.1-201ENST00000610958 165 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.57□□□□□ -1.52
FOXA1P55317 OR8A1-204ENST00000642111 1145 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 AF287957.1-201ENST00000607368 1595 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
FOXA1P55317 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
FOXA1P55317 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
FOXA1P55317 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.57□□□□□ -1.52
FOXA1P55317 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
FOXA1P55317 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
FOXA1P55317 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
FOXA1P55317 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
FOXA1P55317 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.56□□□□□ -1.52
FOXA1P55317 SAMM50P1-201ENST00000455403 1399 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 AC068870.1-201ENST00000563737 2455 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.56□□□□□ -1.52
FOXA1P55317 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.56□□□□□ -1.52
FOXA1P55317 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
FOXA1P55317 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.56□□□□□ -1.52
FOXA1P55317 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
FOXA1P55317 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.56□□□□□ -1.52
FOXA1P55317 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
FOXA1P55317 AC096921.1-201ENST00000411661 375 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.56□□□□□ -1.52
FOXA1P55317 AL158827.1-201ENST00000416300 391 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.56□□□□□ -1.52
FOXA1P55317 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.56□□□□□ -1.52
FOXA1P55317 RNGTTP1-201ENST00000420965 728 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.56□□□□□ -1.52
FOXA1P55317 MTND2P40-201ENST00000436718 841 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.56□□□□□ -1.52
FOXA1P55317 OR7E116P-201ENST00000448529 957 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 AC009963.4-201ENST00000448535 339 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 AC098847.1-201ENST00000473094 348 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 RNA5SP340-201ENST00000517132 107 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.56□□□□□ -1.52
FOXA1P55317 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.56□□□□□ -1.52
FOXA1P55317 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.56□□□□□ -1.52
FOXA1P55317 AC002519.2-203ENST00000567043 837 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.56□□□□□ -1.52
FOXA1P55317 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.56□□□□□ -1.52
FOXA1P55317 DHFRP1-201ENST00000579682 559 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 MIR4776-2-201ENST00000580204 80 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 MIR4502-201ENST00000580432 81 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 AC091167.5-201ENST00000605689 894 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.56□□□□□ -1.52
FOXA1P55317 AL031658.2-201ENST00000616850 651 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 AC005618.4-201ENST00000625053 554 ntBASIC5.56□□□□□ -1.52
FOXA1P55317 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.56□□□□□ -1.52
FOXA1P55317 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.56□□□□□ -1.52
FOXA1P55317 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.56□□□□□ -1.52
FOXA1P55317 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.56□□□□□ -1.52
FOXA1P55317 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms