Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 MTCO1P11-201ENST00000429111 1528 ntBASIC5.57□□□□□ -1.52
HOXD4P09016 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
HOXD4P09016 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HOXD4P09016 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXD4P09016 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXD4P09016 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
HOXD4P09016 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
HOXD4P09016 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
HOXD4P09016 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXD4P09016 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 RPL35AP31-201ENST00000418340 337 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXD4P09016 REREP1Y-201ENST00000422655 198 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 CDY8P-201ENST00000428380 1279 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 NPM1P25-201ENST00000429734 854 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 REREP2Y-201ENST00000439103 200 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 CDY20P-201ENST00000447528 1279 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXD4P09016 UCK2-205ENST00000469256 753 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXD4P09016 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXD4P09016 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC5.56□□□□□ -1.52
HOXD4P09016 AC006499.4-201ENST00000510947 694 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXD4P09016 AC022826.1-201ENST00000519383 805 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXD4P09016 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXD4P09016 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXD4P09016 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXD4P09016 AC019322.1-201ENST00000571869 389 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXD4P09016 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXD4P09016 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXD4P09016 MIR6768-201ENST00000610734 72 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 AC006924.1-201ENST00000610750 559 ntBASIC5.56□□□□□ -1.52
HOXD4P09016 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXD4P09016 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXD4P09016 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXD4P09016 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXD4P09016 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 AC022325.1-201ENST00000502748 2199 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXD4P09016 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HOXD4P09016 MIR130B-202ENST00000385018 82 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 Z68694.1-201ENST00000413929 841 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 AC092651.1-201ENST00000426110 312 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 RPS7P14-201ENST00000426405 583 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXD4P09016 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 HLA-DPA3-207ENST00000454398 229 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 RANP2-201ENST00000456833 229 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 SEPT14P1-201ENST00000458703 648 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 AC007998.1-201ENST00000474156 672 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXD4P09016 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 PSMA2P2-201ENST00000504319 686 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXD4P09016 CR383658.1-201ENST00000514609 734 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 SNORD46.2-201ENST00000516021 102 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXD4P09016 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXD4P09016 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXD4P09016 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXD4P09016 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXD4P09016 AC010487.1-201ENST00000594408 1172 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 AC119501.1-201ENST00000603646 475 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 AL512652.1-201ENST00000619006 500 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 AC127024.6-201ENST00000621598 424 ntBASIC5.55□□□□□ -1.52
HOXD4P09016 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms