Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPL24P2-201ENST00000421023 475 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 OSTCP4-201ENST00000424397 449 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 FAM204CP-201ENST00000424489 642 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 GAPDHP34-201ENST00000432112 823 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC112492.2-201ENST00000432774 1030 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 MORF4-201ENST00000447135 971 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 OR6C72P-201ENST00000451403 892 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC124945.1-201ENST00000485133 188 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC093816.1-201ENST00000515076 913 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC124891.1-201ENST00000536322 519 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 MTND2P17-201ENST00000550281 688 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC004232.2-201ENST00000574245 821 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 MIR3154-201ENST00000577829 84 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 AL589765.6-201ENST00000601909 549 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC011891.2-201ENST00000604949 397 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 RN7SL261P-201ENST00000613441 282 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC012676.3-201ENST00000614983 479 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC003001.2-201ENST00000616294 831 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC006213.5-201ENST00000619673 288 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 AP001153.1-201ENST00000641024 338 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 WDR95P-201ENST00000425638 1542 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 PPBPP2-201ENST00000513150 1362 ntBASIC5.27□□□□□ -1.57
NKX3-1Q99801 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
NKX3-1Q99801 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
NKX3-1Q99801 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC140479.2-201ENST00000421567 3130 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 RNA5SP77-201ENST00000365394 120 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 PSMA6P1-201ENST00000400275 741 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 PRELID1P1-201ENST00000403549 660 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 MTND2P12-201ENST00000417560 1252 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 THEM7P-201ENST00000419556 672 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AL590399.2-201ENST00000427536 309 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC009963.4-201ENST00000448535 339 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 RN7SL168P-201ENST00000463821 279 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AK5-208ENST00000478255 556 ntTSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AL117692.1-201ENST00000494283 713 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 SNX18P24-201ENST00000505249 671 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC113367.2-201ENST00000505749 160 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 OR4D12P-201ENST00000509361 911 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC021146.10-201ENST00000515628 706 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 RNU6-943P-201ENST00000516960 98 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 IGHV4-55-201ENST00000520889 368 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 OR4A41P-201ENST00000533053 928 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC121758.1-202ENST00000556917 658 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 MT1CP-201ENST00000567054 174 ntBASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.26□□□□□ -1.57
NKX3-1Q99801 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms