Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 RNA5SP500-201ENST00000364486 119 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 MIR1203-201ENST00000408812 85 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 HMGN1P20-201ENST00000411849 300 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC009963.4-201ENST00000448535 339 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 PFN1P6-201ENST00000476786 399 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 RPL38P3-201ENST00000484463 213 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 CR383656.1-201ENST00000484916 377 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 OR4A42P-201ENST00000531397 938 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 PCNAP4-201ENST00000532690 730 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC006530.1-201ENST00000555980 571 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AL356801.1-201ENST00000559320 294 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 GARSP1-201ENST00000570895 719 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 OR11H2-202ENST00000641517 1085 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC022164.1-201ENST00000568767 2673 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 AC130304.1-201ENST00000622942 2385 ntBASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
C9orf40Q8IXQ3 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 MSL3P1-202ENST00000440028 1468 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 RNU11-201ENST00000387069 134 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 VN1R3-201ENST00000418822 919 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 NME1P1-201ENST00000420914 382 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC144530.1-201ENST00000452862 555 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC093166.4-201ENST00000457867 318 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AL603882.1-201ENST00000463059 681 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AL157777.1-201ENST00000468100 304 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC093815.1-201ENST00000508637 280 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 RNA5SP271-201ENST00000516700 88 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AP004609.2-201ENST00000532177 190 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC092121.1-201ENST00000569452 202 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AL360012.1-201ENST00000602813 131 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AL355974.3-201ENST00000617383 467 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 MIR6861-201ENST00000618657 64 ntBASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
C9orf40Q8IXQ3 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms