Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC007485.2-201ENST00000623493 1667 ntBASIC6.09□□□□□ -1.43
COL28A1Q2UY09 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL28A1Q2UY09 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL28A1Q2UY09 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
COL28A1Q2UY09 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.44
COL28A1Q2UY09 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.09□□□□□ -1.44
COL28A1Q2UY09 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC6.09□□□□□ -1.44
COL28A1Q2UY09 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 RNA5SP273-201ENST00000362484 113 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 RN7SKP115-201ENST00000363177 317 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 RNU6-564P-201ENST00000410983 104 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 RN7SKP293-201ENST00000411389 296 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AL392003.1-201ENST00000434394 243 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 EMC3-AS1-205ENST00000438698 534 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC064862.4-201ENST00000442180 334 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AP000281.1-201ENST00000444036 316 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC002075.1-201ENST00000457396 676 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 CST12P-201ENST00000457644 362 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 SULT1D1P-201ENST00000458020 882 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC093270.2-201ENST00000486157 792 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 ATG10-AS1-201ENST00000504846 648 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC095052.1-201ENST00000509955 863 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC117525.1-201ENST00000515228 503 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 Y_RNA.667-201ENST00000516212 107 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC106785.4-201ENST00000569492 412 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AP005136.2-201ENST00000583253 1049 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC005225.5-201ENST00000623547 2225 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 AC011504.1-201ENST00000623331 4103 ntBASIC6.08□□□□□ -1.44
COL28A1Q2UY09 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL28A1Q2UY09 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 IMMTP1-201ENST00000435590 2219 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 MT-RNR1-201ENST00000389680 954 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 OR3A2-201ENST00000408891 1076 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 PTMAP6-201ENST00000439110 327 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC114878.1-201ENST00000441166 358 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 RPS27AP2-201ENST00000457576 465 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 PPP1R11P1-201ENST00000486095 376 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 RNA5SP34-201ENST00000516887 130 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.07□□□□□ -1.44
COL28A1Q2UY09 BMPR1APS2-201ENST00000527904 1012 ntBASIC6.07□□□□□ -1.44
COL28A1Q2UY09 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms