Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL591135.1-201ENST00000401578 5914 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.59□□□□□ -1.51
FOXA1P55317 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
FOXA1P55317 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC109446.4-201ENST00000623235 2755 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
FOXA1P55317 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.59□□□□□ -1.51
FOXA1P55317 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.59□□□□□ -1.51
FOXA1P55317 DNM1P47-203ENST00000571780 12667 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AC092451.3-201ENST00000625067 1343 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
FOXA1P55317 AP002512.4-202ENST00000641599 4530 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.59□□□□□ -1.51
FOXA1P55317 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.59□□□□□ -1.51
FOXA1P55317 RNU1-136P-201ENST00000384181 164 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 RBBP4P5-201ENST00000398583 1266 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.59□□□□□ -1.51
FOXA1P55317 PNKDP1-201ENST00000435914 430 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC005077.1-201ENST00000449226 375 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 OR52I1-201ENST00000450052 1050 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AC073476.1-201ENST00000452854 407 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC092865.4-201ENST00000477936 615 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 DUTP1-201ENST00000493631 470 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 OR7E157P-201ENST00000494376 911 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AC018797.1-201ENST00000510791 255 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 GAPDHP62-201ENST00000515313 990 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AP003033.2-201ENST00000528901 805 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC121758.1-202ENST00000556917 658 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.59□□□□□ -1.51
FOXA1P55317 ARGFXP2-201ENST00000579304 949 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AC005244.1-201ENST00000582566 339 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.59□□□□□ -1.51
FOXA1P55317 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
FOXA1P55317 AL139099.4-201ENST00000614802 114 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
FOXA1P55317 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
FOXA1P55317 AL161912.4-201ENST00000623889 2468 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
FOXA1P55317 AC078880.4-201ENST00000617627 1749 ntBASIC5.59□□□□□ -1.51
FOXA1P55317 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
FOXA1P55317 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.59□□□□□ -1.52
FOXA1P55317 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
FOXA1P55317 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
FOXA1P55317 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
FOXA1P55317 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
FOXA1P55317 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
FOXA1P55317 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
FOXA1P55317 AL137058.3-201ENST00000624531 3099 ntBASIC5.59□□□□□ -1.52
FOXA1P55317 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC5.58□□□□□ -1.52
FOXA1P55317 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.58□□□□□ -1.52
FOXA1P55317 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
FOXA1P55317 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.58□□□□□ -1.52
FOXA1P55317 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
FOXA1P55317 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
FOXA1P55317 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
FOXA1P55317 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.58□□□□□ -1.52
FOXA1P55317 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
FOXA1P55317 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.58□□□□□ -1.52
FOXA1P55317 RN7SKP185-201ENST00000362813 326 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 RN7SKP29-201ENST00000410957 272 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.58□□□□□ -1.52
FOXA1P55317 MRPS21P3-201ENST00000436696 262 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.58□□□□□ -1.52
FOXA1P55317 AC091874.2-201ENST00000505889 720 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 AC093815.1-201ENST00000508637 280 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.58□□□□□ -1.52
FOXA1P55317 AC137627.1-201ENST00000545761 289 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC5.58□□□□□ -1.52
FOXA1P55317 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
FOXA1P55317 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.58□□□□□ -1.52
FOXA1P55317 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.58□□□□□ -1.52
FOXA1P55317 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC5.58□□□□□ -1.52
FOXA1P55317 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.58□□□□□ -1.52
FOXA1P55317 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.58□□□□□ -1.52
FOXA1P55317 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.58□□□□□ -1.52
FOXA1P55317 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.58□□□□□ -1.52
FOXA1P55317 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.58□□□□□ -1.52
FOXA1P55317 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
FOXA1P55317 HSPD1P9-201ENST00000420325 1636 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 UGT2B24P-201ENST00000514441 1597 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
FOXA1P55317 QRSL1P1-201ENST00000400977 1540 ntBASIC5.58□□□□□ -1.52
FOXA1P55317 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
FOXA1P55317 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.58□□□□□ -1.52
FOXA1P55317 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.57□□□□□ -1.52
FOXA1P55317 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 AC009962.1-201ENST00000567327 3813 ntBASIC5.57□□□□□ -1.52
FOXA1P55317 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
FOXA1P55317 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.57□□□□□ -1.52
FOXA1P55317 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms