Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC133644.2-201ENST00000608142 540 ntBASIC8.2□□□□□ -1.1
MSH6P52701 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC8.2□□□□□ -1.1
MSH6P52701 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSH6P52701 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSH6P52701 MRE11P1-201ENST00000464884 2127 ntBASIC8.2□□□□□ -1.1
MSH6P52701 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC8.2□□□□□ -1.1
MSH6P52701 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSH6P52701 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC8.19□□□□□ -1.1
MSH6P52701 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSH6P52701 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSH6P52701 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSH6P52701 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC8.19□□□□□ -1.1
MSH6P52701 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSH6P52701 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC8.19□□□□□ -1.1
MSH6P52701 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSH6P52701 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
MSH6P52701 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSH6P52701 AC011815.2-201ENST00000618230 2021 ntBASIC8.19□□□□□ -1.1
MSH6P52701 EEF1A1P30-201ENST00000429708 1315 ntBASIC8.19□□□□□ -1.1
MSH6P52701 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
MSH6P52701 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC8.19□□□□□ -1.1
MSH6P52701 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSH6P52701 SNORA11-201ENST00000408789 128 ntBASIC8.19□□□□□ -1.1
MSH6P52701 RPS4XP5-201ENST00000419038 768 ntBASIC8.19□□□□□ -1.1
MSH6P52701 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC8.19□□□□□ -1.1
MSH6P52701 PSMD10P3-201ENST00000437000 448 ntBASIC8.19□□□□□ -1.1
MSH6P52701 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC8.19□□□□□ -1.1
MSH6P52701 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC8.19□□□□□ -1.1
MSH6P52701 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
MSH6P52701 SCARNA6.1-201ENST00000516989 238 ntBASIC8.19□□□□□ -1.1
MSH6P52701 AC022832.1-201ENST00000530718 645 ntBASIC8.19□□□□□ -1.1
MSH6P52701 MIR3189-201ENST00000578735 73 ntBASIC8.19□□□□□ -1.1
MSH6P52701 MIR4260-201ENST00000583107 67 ntBASIC8.19□□□□□ -1.1
MSH6P52701 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC8.19□□□□□ -1.1
MSH6P52701 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC8.19□□□□□ -1.1
MSH6P52701 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC8.19□□□□□ -1.1
MSH6P52701 AL390318.1-201ENST00000624564 687 ntBASIC8.19□□□□□ -1.1
MSH6P52701 AP001541.1-201ENST00000623322 1904 ntBASIC8.19□□□□□ -1.1
MSH6P52701 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC8.19□□□□□ -1.1
MSH6P52701 EEF1A1P24-201ENST00000451469 1378 ntBASIC8.19□□□□□ -1.1
MSH6P52701 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
MSH6P52701 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSH6P52701 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSH6P52701 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC8.18□□□□□ -1.1
MSH6P52701 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSH6P52701 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC8.18□□□□□ -1.1
MSH6P52701 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC8.18□□□□□ -1.1
MSH6P52701 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC8.18□□□□□ -1.1
MSH6P52701 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC8.18□□□□□ -1.1
MSH6P52701 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC8.18□□□□□ -1.1
MSH6P52701 VDAC1P6-201ENST00000430062 855 ntBASIC8.18□□□□□ -1.1
MSH6P52701 RAB28P2-201ENST00000454299 641 ntBASIC8.18□□□□□ -1.1
MSH6P52701 AC093890.1-201ENST00000502554 540 ntBASIC8.18□□□□□ -1.1
MSH6P52701 PGAM1P13-201ENST00000507497 754 ntBASIC8.18□□□□□ -1.1
MSH6P52701 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC8.18□□□□□ -1.1
MSH6P52701 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC8.18□□□□□ -1.1
MSH6P52701 GSTP1P1-201ENST00000548078 319 ntBASIC8.18□□□□□ -1.1
MSH6P52701 OR1F2P-201ENST00000570470 933 ntBASIC8.18□□□□□ -1.1
MSH6P52701 AC012254.5-201ENST00000623573 478 ntBASIC8.18□□□□□ -1.1
MSH6P52701 OR11H2-202ENST00000641517 1085 ntBASIC8.18□□□□□ -1.1
MSH6P52701 AC087269.2-201ENST00000641764 975 ntBASIC8.18□□□□□ -1.1
MSH6P52701 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSH6P52701 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
MSH6P52701 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
MSH6P52701 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC8.18□□□□□ -1.1
MSH6P52701 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSH6P52701 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
MSH6P52701 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSH6P52701 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
MSH6P52701 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSH6P52701 AC007842.1-201ENST00000597336 2039 ntBASIC8.17□□□□□ -1.1
MSH6P52701 AC112255.1-201ENST00000624070 2493 ntBASIC8.17□□□□□ -1.1
MSH6P52701 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
MSH6P52701 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSH6P52701 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC8.17□□□□□ -1.1
MSH6P52701 BIN2P1-201ENST00000504996 1530 ntBASIC8.17□□□□□ -1.1
MSH6P52701 CR1-204ENST00000367052 7469 ntTSL 5 BASIC8.17□□□□□ -1.1
MSH6P52701 CR1-205ENST00000367053 7469 ntTSL 5 BASIC8.17□□□□□ -1.1
MSH6P52701 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSH6P52701 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC8.17□□□□□ -1.1
MSH6P52701 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC8.17□□□□□ -1.1
MSH6P52701 RNA5SP333-201ENST00000363466 118 ntBASIC8.17□□□□□ -1.1
MSH6P52701 RNA5SP334-201ENST00000364825 118 ntBASIC8.17□□□□□ -1.1
MSH6P52701 RMRPP5-201ENST00000411156 267 ntBASIC8.17□□□□□ -1.1
MSH6P52701 RAB28P1-201ENST00000411517 641 ntBASIC8.17□□□□□ -1.1
MSH6P52701 FAR2P2-201ENST00000413041 594 ntBASIC8.17□□□□□ -1.1
MSH6P52701 AL133173.1-201ENST00000423458 397 ntBASIC8.17□□□□□ -1.1
MSH6P52701 SRSF1P1-201ENST00000424058 520 ntBASIC8.17□□□□□ -1.1
MSH6P52701 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC8.17□□□□□ -1.1
MSH6P52701 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC8.17□□□□□ -1.1
MSH6P52701 FAR2P4-202ENST00000425399 584 ntBASIC8.17□□□□□ -1.1
MSH6P52701 OR52B5P-201ENST00000435337 951 ntBASIC8.17□□□□□ -1.1
MSH6P52701 AZGP1P2-201ENST00000454506 345 ntBASIC8.17□□□□□ -1.1
MSH6P52701 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC8.17□□□□□ -1.1
MSH6P52701 LDHBP2-201ENST00000456969 1005 ntBASIC8.17□□□□□ -1.1
MSH6P52701 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC8.17□□□□□ -1.1
MSH6P52701 OR6M2P-201ENST00000529831 871 ntBASIC8.17□□□□□ -1.1
MSH6P52701 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
MSH6P52701 NOP10-202ENST00000557912 436 ntTSL 2 BASIC8.17□□□□□ -1.1
MSH6P52701 AC119403.2-201ENST00000590960 598 ntBASIC8.17□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms