Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC017079.1-201ENST00000333650 415 ntBASIC6.25□□□□□ -1.41
MSX2P35548 RN7SKP237-201ENST00000364663 301 ntBASIC6.25□□□□□ -1.41
MSX2P35548 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 LCN1P2-201ENST00000372030 223 ntBASIC6.25□□□□□ -1.41
MSX2P35548 ALOX5AP-201ENST00000380490 904 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
MSX2P35548 NPM1P38-201ENST00000403835 865 ntBASIC6.25□□□□□ -1.41
MSX2P35548 TYMSP1-201ENST00000407851 869 ntBASIC6.25□□□□□ -1.41
MSX2P35548 LSM5-202ENST00000409292 538 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX2P35548 RNA5SP177-201ENST00000410122 107 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC6.25□□□□□ -1.41
MSX2P35548 RPL23AP18-201ENST00000416139 468 ntBASIC6.25□□□□□ -1.41
MSX2P35548 QRSL1P2-201ENST00000418582 964 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AC134879.1-201ENST00000426062 394 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX2P35548 AC007365.2-201ENST00000428806 458 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AL589823.1-201ENST00000429577 183 ntBASIC6.25□□□□□ -1.41
MSX2P35548 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX2P35548 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 ARF4P4-201ENST00000439608 520 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX2P35548 MGAT2P1-201ENST00000449718 797 ntBASIC6.25□□□□□ -1.41
MSX2P35548 RN7SL308P-201ENST00000464971 297 ntBASIC6.25□□□□□ -1.41
MSX2P35548 SLC25A51P1-201ENST00000468432 871 ntBASIC6.25□□□□□ -1.41
MSX2P35548 RN7SL815P-201ENST00000470970 290 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX2P35548 AC016687.1-201ENST00000482574 353 ntBASIC6.25□□□□□ -1.41
MSX2P35548 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 AC118282.2-201ENST00000508739 374 ntBASIC6.25□□□□□ -1.41
MSX2P35548 HPRT1P1-201ENST00000509498 657 ntBASIC6.25□□□□□ -1.41
MSX2P35548 FABP5P6-201ENST00000510588 409 ntBASIC6.25□□□□□ -1.41
MSX2P35548 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX2P35548 AC008494.2-201ENST00000514544 370 ntBASIC6.25□□□□□ -1.41
MSX2P35548 Vault.2-201ENST00000516519 98 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX2P35548 AP001804.1-201ENST00000526868 919 ntBASIC6.25□□□□□ -1.41
MSX2P35548 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX2P35548 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX2P35548 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX2P35548 NQO1-205ENST00000561500 891 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX2P35548 BMS1P8-201ENST00000565049 1178 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX2P35548 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX2P35548 MIR5010-201ENST00000582846 120 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX2P35548 NDUFA3P1-201ENST00000588007 252 ntBASIC6.25□□□□□ -1.41
MSX2P35548 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX2P35548 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX2P35548 AL096803.3-201ENST00000609032 532 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX2P35548 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX2P35548 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC6.25□□□□□ -1.41
MSX2P35548 OR5AU1-204ENST00000641822 1197 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AL121936.2-201ENST00000641935 662 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AC096656.1-201ENST00000623826 1364 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX2P35548 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
MSX2P35548 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
MSX2P35548 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
MSX2P35548 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 CCDC150P1-201ENST00000537123 2215 ntBASIC6.25□□□□□ -1.41
MSX2P35548 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 EEF1A1P12-201ENST00000443590 1346 ntBASIC6.25□□□□□ -1.41
MSX2P35548 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 OR2A3P-202ENST00000641249 1776 ntBASIC6.24□□□□□ -1.41
MSX2P35548 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX2P35548 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.24□□□□□ -1.41
MSX2P35548 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
MSX2P35548 RNU6-1331P-201ENST00000363658 106 ntBASIC6.24□□□□□ -1.41
MSX2P35548 S100A5-202ENST00000368718 710 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 PPIAP26-201ENST00000377951 522 ntBASIC6.24□□□□□ -1.41
MSX2P35548 SNORA70.9-201ENST00000384370 135 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AL023284.3-201ENST00000407767 334 ntBASIC6.24□□□□□ -1.41
MSX2P35548 RNU6-648P-201ENST00000410190 107 ntBASIC6.24□□□□□ -1.41
MSX2P35548 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 XIST-201ENST00000416330 750 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX2P35548 OR5M12P-201ENST00000423388 929 ntBASIC6.24□□□□□ -1.41
MSX2P35548 PPIL1P1-201ENST00000423936 499 ntBASIC6.24□□□□□ -1.41
MSX2P35548 CYP4F34P-201ENST00000425951 481 ntBASIC6.24□□□□□ -1.41
MSX2P35548 Z68868.1-201ENST00000429048 544 ntBASIC6.24□□□□□ -1.41
MSX2P35548 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX2P35548 AL513303.1-201ENST00000432452 591 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX2P35548 AC010153.1-201ENST00000432862 727 ntBASIC6.24□□□□□ -1.41
MSX2P35548 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 RPL7P55-201ENST00000450522 746 ntBASIC6.24□□□□□ -1.41
MSX2P35548 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX2P35548 RPS26P11-201ENST00000463445 348 ntBASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms