Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 OFD1P15Y-201ENST00000411536 1392 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC7.18□□□□□ -1.26
COL6A1P12109 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL6A1P12109 PRNCR1-201ENST00000635449 12727 ntBASIC7.18□□□□□ -1.26
COL6A1P12109 AL353743.3-201ENST00000442109 1468 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 AC053481.2-202ENST00000582394 1500 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 AC112255.1-201ENST00000624070 2493 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 PPCS-201ENST00000372556 984 ntTSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 AL358178.1-201ENST00000407698 397 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 PRUNEP1-201ENST00000425846 705 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC7.17□□□□□ -1.26
COL6A1P12109 AL353662.1-201ENST00000439099 327 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC7.17□□□□□ -1.26
COL6A1P12109 SUMO2P1-206ENST00000445436 284 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 MTND2P6-201ENST00000455337 1030 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 RPS27AP2-201ENST00000457576 465 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 AC026348.1-201ENST00000462549 1053 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC7.17□□□□□ -1.26
COL6A1P12109 RN7SKP238-201ENST00000516483 249 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC7.17□□□□□ -1.26
COL6A1P12109 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC7.17□□□□□ -1.26
COL6A1P12109 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC7.17□□□□□ -1.26
COL6A1P12109 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC7.17□□□□□ -1.26
COL6A1P12109 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 MRPS36P5-201ENST00000551909 298 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC7.17□□□□□ -1.26
COL6A1P12109 AC007225.2-201ENST00000562529 256 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 AGGF1P5-201ENST00000567900 919 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC7.17□□□□□ -1.26
COL6A1P12109 MRO-208ENST00000588444 866 ntTSL 3 BASIC7.17□□□□□ -1.26
COL6A1P12109 AC068768.2-201ENST00000602352 343 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC7.17□□□□□ -1.26
COL6A1P12109 U1.34-201ENST00000618578 162 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 AC069234.4-201ENST00000621276 412 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC7.17□□□□□ -1.26
COL6A1P12109 AC073488.3-201ENST00000631611 778 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC7.17□□□□□ -1.26
COL6A1P12109 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC7.17□□□□□ -1.26
COL6A1P12109 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 DYNC1I2P1-201ENST00000435916 1838 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 AC132219.2-201ENST00000624416 2327 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL6A1P12109 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC7.17□□□□□ -1.26
COL6A1P12109 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC7.17□□□□□ -1.26
COL6A1P12109 AC011503.2-201ENST00000594230 1500 ntBASIC7.17□□□□□ -1.26
COL6A1P12109 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC7.16□□□□□ -1.26
COL6A1P12109 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
COL6A1P12109 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 NBPF8-201ENST00000583271 5330 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC7.16□□□□□ -1.26
COL6A1P12109 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 AC123769.1-201ENST00000530992 3192 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 AL078595.1-201ENST00000404458 226 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 RN7SKP281-201ENST00000410472 352 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC7.16□□□□□ -1.26
COL6A1P12109 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC7.16□□□□□ -1.26
COL6A1P12109 UBE2D3P3-201ENST00000426992 425 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AL121776.1-201ENST00000429337 372 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 MTND5P25-201ENST00000430499 799 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC7.16□□□□□ -1.26
COL6A1P12109 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC7.16□□□□□ -1.26
COL6A1P12109 MTCYBP31-201ENST00000438855 1122 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 SOCS5P1-201ENST00000440415 949 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AC009237.1-201ENST00000442127 744 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL6A1P12109 OR6C72P-201ENST00000451403 892 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 TSACC-207ENST00000470342 601 ntTSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 AC008410.1-201ENST00000483777 339 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 AC117395.1-201ENST00000487390 403 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
COL6A1P12109 RPL5P11-201ENST00000498068 893 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC7.16□□□□□ -1.26
COL6A1P12109 AC021106.1-201ENST00000509020 1058 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 OR4D12P-201ENST00000509361 911 ntBASIC7.16□□□□□ -1.26
COL6A1P12109 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC7.16□□□□□ -1.26
COL6A1P12109 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms