Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 NIFKP9-201ENST00000419265 221 ntBASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 FAM197Y1-201ENST00000421178 764 ntBASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 KRT18P16-201ENST00000510337 1294 ntBASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 AC073912.3-201ENST00000624414 853 ntBASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLCF1Q9UBD9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 BX088651.1-201ENST00000540551 451 ntBASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLCF1Q9UBD9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 KSR1P1-201ENST00000446298 240 ntBASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 AL355075.4-201ENST00000554988 638 ntBASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 FEM1AP1-201ENST00000431297 1995 ntBASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLCF1Q9UBD9 GABARAPL3-202ENST00000624044 1851 ntBASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 AL512408.1-201ENST00000569378 2000 ntBASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 AL355355.2-201ENST00000442321 338 ntBASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 AP003071.4-201ENST00000562276 1284 ntBASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLCF1Q9UBD9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLCF1Q9UBD9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms