Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.32■□□□□ 0.36
COL12A1Q99715 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL12A1Q99715 AC092329.2-201ENST00000598402 547 ntBASIC17.32■□□□□ 0.36
COL12A1Q99715 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
COL12A1Q99715 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.32■□□□□ 0.36
COL12A1Q99715 AC141257.4-201ENST00000634557 245 ntBASIC17.32■□□□□ 0.36
COL12A1Q99715 AC136944.6-201ENST00000634818 245 ntBASIC17.32■□□□□ 0.36
COL12A1Q99715 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL12A1Q99715 AC011484.1-201ENST00000377652 1995 ntBASIC17.31■□□□□ 0.36
COL12A1Q99715 RCC2P6-201ENST00000526625 1557 ntBASIC17.31■□□□□ 0.36
COL12A1Q99715 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL12A1Q99715 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL12A1Q99715 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.31■□□□□ 0.36
COL12A1Q99715 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.31■□□□□ 0.36
COL12A1Q99715 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL12A1Q99715 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.31■□□□□ 0.36
COL12A1Q99715 AL662844.1-201ENST00000546340 181 ntBASIC17.31■□□□□ 0.36
COL12A1Q99715 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.31■□□□□ 0.36
COL12A1Q99715 AC010653.2-201ENST00000623505 997 ntBASIC17.31■□□□□ 0.36
COL12A1Q99715 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
COL12A1Q99715 AL121603.2-201ENST00000557373 2117 ntBASIC17.31■□□□□ 0.36
COL12A1Q99715 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.31■□□□□ 0.36
COL12A1Q99715 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
COL12A1Q99715 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.31■□□□□ 0.36
COL12A1Q99715 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL12A1Q99715 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
COL12A1Q99715 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL12A1Q99715 MIR574-201ENST00000385209 96 ntBASIC17.31■□□□□ 0.36
COL12A1Q99715 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL12A1Q99715 AP000692.2-201ENST00000608391 879 ntBASIC17.31■□□□□ 0.36
COL12A1Q99715 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.31■□□□□ 0.36
COL12A1Q99715 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL12A1Q99715 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL12A1Q99715 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
COL12A1Q99715 HLA-A-201ENST00000376802 1334 ntBASIC17.3■□□□□ 0.36
COL12A1Q99715 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL12A1Q99715 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.3■□□□□ 0.36
COL12A1Q99715 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.3■□□□□ 0.36
COL12A1Q99715 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.3■□□□□ 0.36
COL12A1Q99715 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
COL12A1Q99715 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 AL160237.2-201ENST00000556165 472 ntBASIC17.3■□□□□ 0.36
COL12A1Q99715 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.3■□□□□ 0.36
COL12A1Q99715 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL12A1Q99715 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL12A1Q99715 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.3■□□□□ 0.36
COL12A1Q99715 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL12A1Q99715 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.29■□□□□ 0.36
COL12A1Q99715 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.29■□□□□ 0.36
COL12A1Q99715 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL12A1Q99715 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL12A1Q99715 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.29■□□□□ 0.36
COL12A1Q99715 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.29■□□□□ 0.36
COL12A1Q99715 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.29■□□□□ 0.36
COL12A1Q99715 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.29■□□□□ 0.36
COL12A1Q99715 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.29■□□□□ 0.36
COL12A1Q99715 AC140113.3-201ENST00000605663 199 ntBASIC17.29■□□□□ 0.36
COL12A1Q99715 AL031432.5-201ENST00000641059 760 ntBASIC17.29■□□□□ 0.36
COL12A1Q99715 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.29■□□□□ 0.36
COL12A1Q99715 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL12A1Q99715 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.29■□□□□ 0.36
COL12A1Q99715 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
COL12A1Q99715 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL12A1Q99715 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL12A1Q99715 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.29■□□□□ 0.36
COL12A1Q99715 TSPY17P-201ENST00000450329 467 ntBASIC17.29■□□□□ 0.36
COL12A1Q99715 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL12A1Q99715 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.29■□□□□ 0.36
COL12A1Q99715 AC106795.1-205ENST00000512851 1056 ntBASIC17.29■□□□□ 0.36
COL12A1Q99715 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL12A1Q99715 IFNL4P1-201ENST00000607083 540 ntBASIC17.29■□□□□ 0.36
COL12A1Q99715 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.28■□□□□ 0.36
COL12A1Q99715 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.28■□□□□ 0.36
COL12A1Q99715 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
COL12A1Q99715 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COL12A1Q99715 AL136038.3-201ENST00000561909 1096 ntBASIC17.28■□□□□ 0.36
COL12A1Q99715 C1QL1P1-201ENST00000568105 661 ntBASIC17.28■□□□□ 0.36
COL12A1Q99715 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.28■□□□□ 0.36
COL12A1Q99715 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL12A1Q99715 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.28■□□□□ 0.36
COL12A1Q99715 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms