Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 CD81-212ENST00000526072 1172 ntTSL 5 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 AC012313.10-201ENST00000623509 926 ntBASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 AL121956.5-201ENST00000625261 221 ntBASIC24.26■■□□□ 1.47
CCDC88AQ3V6T2 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 AC079834.2-201ENST00000609776 1949 ntBASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 BET1L-202ENST00000332865 533 ntTSL 5 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 AC139887.4-201ENST00000607877 719 ntBASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 FAM87A-204ENST00000613235 858 ntBASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC24.25■■□□□ 1.47
CCDC88AQ3V6T2 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 CD70-202ENST00000423145 881 ntTSL 2 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC24.24■■□□□ 1.47
CCDC88AQ3V6T2 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 CYGB-204ENST00000589342 815 ntTSL 3 BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC88AQ3V6T2 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 TSPY5P-201ENST00000426936 936 ntBASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 GXYLT1P6-201ENST00000456472 1187 ntBASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 CLEC4GP1-201ENST00000596555 870 ntBASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC24.22■■□□□ 1.47
CCDC88AQ3V6T2 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC88AQ3V6T2 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 FP700111.2-201ENST00000619190 1892 ntBASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 TSPY21P-201ENST00000433481 731 ntBASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 TSPY23P-201ENST00000440136 739 ntBASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 RCC2P6-201ENST00000526625 1557 ntBASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
CCDC88AQ3V6T2 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC24.19■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms