Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LIM2P55344 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.72■□□□□ 0.59
LIM2P55344 AC116351.2-201ENST00000606540 1585 ntBASIC18.72■□□□□ 0.59
LIM2P55344 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.72■□□□□ 0.59
LIM2P55344 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LIM2P55344 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.72■□□□□ 0.59
LIM2P55344 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIM2P55344 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LIM2P55344 AC018553.1-201ENST00000616682 1458 ntBASIC18.71■□□□□ 0.59
LIM2P55344 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.71■□□□□ 0.59
LIM2P55344 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.71■□□□□ 0.59
LIM2P55344 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.71■□□□□ 0.59
LIM2P55344 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 KRT17P3-201ENST00000420566 1262 ntBASIC18.71■□□□□ 0.59
LIM2P55344 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.71■□□□□ 0.59
LIM2P55344 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.71■□□□□ 0.59
LIM2P55344 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
LIM2P55344 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.71■□□□□ 0.59
LIM2P55344 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
LIM2P55344 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
LIM2P55344 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.71■□□□□ 0.59
LIM2P55344 AP001271.2-201ENST00000624018 1556 ntBASIC18.71■□□□□ 0.59
LIM2P55344 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.71■□□□□ 0.59
LIM2P55344 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.71■□□□□ 0.59
LIM2P55344 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.71■□□□□ 0.59
LIM2P55344 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIM2P55344 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.7■□□□□ 0.58
LIM2P55344 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.7■□□□□ 0.58
LIM2P55344 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LIM2P55344 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.7■□□□□ 0.58
LIM2P55344 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.7■□□□□ 0.58
LIM2P55344 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
LIM2P55344 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.7■□□□□ 0.58
LIM2P55344 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 POU5F1P3-201ENST00000428824 1078 ntBASIC18.7■□□□□ 0.58
LIM2P55344 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.7■□□□□ 0.58
LIM2P55344 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
LIM2P55344 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.7■□□□□ 0.58
LIM2P55344 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 AL121906.2-201ENST00000621597 723 ntBASIC18.7■□□□□ 0.58
LIM2P55344 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LIM2P55344 TMEM179-206ENST00000616017 1645 ntBASIC18.7■□□□□ 0.58
LIM2P55344 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIM2P55344 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.7■□□□□ 0.58
LIM2P55344 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIM2P55344 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.69■□□□□ 0.58
LIM2P55344 AC009237.14-201ENST00000609975 1594 ntBASIC18.69■□□□□ 0.58
LIM2P55344 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIM2P55344 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIM2P55344 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.69■□□□□ 0.58
LIM2P55344 TSPY20P-201ENST00000450910 630 ntBASIC18.69■□□□□ 0.58
LIM2P55344 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIM2P55344 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.69■□□□□ 0.58
LIM2P55344 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.69■□□□□ 0.58
LIM2P55344 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.69■□□□□ 0.58
LIM2P55344 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIM2P55344 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.69■□□□□ 0.58
LIM2P55344 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.69■□□□□ 0.58
LIM2P55344 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
LIM2P55344 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.69■□□□□ 0.58
LIM2P55344 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIM2P55344 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIM2P55344 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIM2P55344 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIM2P55344 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LIM2P55344 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 TFP1-202ENST00000475455 1573 ntBASIC18.68■□□□□ 0.58
LIM2P55344 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.68■□□□□ 0.58
LIM2P55344 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.68■□□□□ 0.58
LIM2P55344 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIM2P55344 AC069544.1-201ENST00000609399 999 ntBASIC18.68■□□□□ 0.58
LIM2P55344 AL121829.2-201ENST00000620908 328 ntBASIC18.68■□□□□ 0.58
LIM2P55344 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms