Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LINC01521-201ENST00000504184 1943 ntBASIC16.69■□□□□ 0.26
USF1P22415 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
USF1P22415 AC124283.5-201ENST00000624661 1809 ntBASIC16.69■□□□□ 0.26
USF1P22415 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
USF1P22415 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.69■□□□□ 0.26
USF1P22415 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
USF1P22415 HLA-G-202ENST00000376815 851 ntBASIC16.69■□□□□ 0.26
USF1P22415 HLA-G-203ENST00000376818 1127 ntBASIC16.69■□□□□ 0.26
USF1P22415 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
USF1P22415 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.69■□□□□ 0.26
USF1P22415 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.69■□□□□ 0.26
USF1P22415 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.69■□□□□ 0.26
USF1P22415 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
USF1P22415 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.69■□□□□ 0.26
USF1P22415 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.69■□□□□ 0.26
USF1P22415 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
USF1P22415 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
USF1P22415 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC16.68■□□□□ 0.26
USF1P22415 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.68■□□□□ 0.26
USF1P22415 MMP23A-201ENST00000234610 1017 ntBASIC16.68■□□□□ 0.26
USF1P22415 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.68■□□□□ 0.26
USF1P22415 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.68■□□□□ 0.26
USF1P22415 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.68■□□□□ 0.26
USF1P22415 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 AC073195.1-201ENST00000607241 877 ntBASIC16.68■□□□□ 0.26
USF1P22415 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.68■□□□□ 0.26
USF1P22415 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.68■□□□□ 0.26
USF1P22415 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
USF1P22415 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
USF1P22415 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
USF1P22415 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.68■□□□□ 0.26
USF1P22415 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
USF1P22415 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.67■□□□□ 0.26
USF1P22415 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
USF1P22415 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
USF1P22415 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.67■□□□□ 0.26
USF1P22415 FAM197Y1-201ENST00000421178 764 ntBASIC16.67■□□□□ 0.26
USF1P22415 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.67■□□□□ 0.26
USF1P22415 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.67■□□□□ 0.26
USF1P22415 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.67■□□□□ 0.26
USF1P22415 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.67■□□□□ 0.26
USF1P22415 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
USF1P22415 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.67■□□□□ 0.26
USF1P22415 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.67■□□□□ 0.26
USF1P22415 AC012306.2-201ENST00000609350 630 ntBASIC16.67■□□□□ 0.26
USF1P22415 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.67■□□□□ 0.26
USF1P22415 PLK5-205ENST00000642079 1969 ntBASIC16.67■□□□□ 0.26
USF1P22415 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.67■□□□□ 0.26
USF1P22415 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms