Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.4■□□□□ 0.38
SGCEO43556 LETM1P2-201ENST00000597330 2178 ntBASIC17.4■□□□□ 0.38
SGCEO43556 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
SGCEO43556 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SGCEO43556 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.4■□□□□ 0.38
SGCEO43556 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SGCEO43556 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SGCEO43556 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.39■□□□□ 0.38
SGCEO43556 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.39■□□□□ 0.38
SGCEO43556 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SGCEO43556 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SGCEO43556 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SGCEO43556 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SGCEO43556 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SGCEO43556 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.39■□□□□ 0.37
SGCEO43556 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.39■□□□□ 0.37
SGCEO43556 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SGCEO43556 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.39■□□□□ 0.37
SGCEO43556 AL138781.1-201ENST00000566567 1274 ntBASIC17.39■□□□□ 0.37
SGCEO43556 AC104771.1-201ENST00000603335 964 ntBASIC17.39■□□□□ 0.37
SGCEO43556 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.39■□□□□ 0.37
SGCEO43556 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SGCEO43556 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SGCEO43556 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SGCEO43556 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SGCEO43556 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.39■□□□□ 0.37
SGCEO43556 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.38■□□□□ 0.37
SGCEO43556 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SGCEO43556 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.38■□□□□ 0.37
SGCEO43556 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SGCEO43556 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SGCEO43556 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.38■□□□□ 0.37
SGCEO43556 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.38■□□□□ 0.37
SGCEO43556 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.38■□□□□ 0.37
SGCEO43556 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.38■□□□□ 0.37
SGCEO43556 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.38■□□□□ 0.37
SGCEO43556 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SGCEO43556 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.38■□□□□ 0.37
SGCEO43556 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SGCEO43556 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SGCEO43556 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.38■□□□□ 0.37
SGCEO43556 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SGCEO43556 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.38■□□□□ 0.37
SGCEO43556 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.37■□□□□ 0.37
SGCEO43556 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SGCEO43556 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.37■□□□□ 0.37
SGCEO43556 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.37■□□□□ 0.37
SGCEO43556 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.37■□□□□ 0.37
SGCEO43556 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SGCEO43556 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.37■□□□□ 0.37
SGCEO43556 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.37■□□□□ 0.37
SGCEO43556 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
SGCEO43556 AC133041.1-202ENST00000642053 222 ntBASIC17.37■□□□□ 0.37
SGCEO43556 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SGCEO43556 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.37■□□□□ 0.37
SGCEO43556 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SGCEO43556 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.36■□□□□ 0.37
SGCEO43556 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.36■□□□□ 0.37
SGCEO43556 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.36■□□□□ 0.37
SGCEO43556 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.36■□□□□ 0.37
SGCEO43556 AC098934.4-201ENST00000564127 592 ntBASIC17.36■□□□□ 0.37
SGCEO43556 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms