Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC26.55■■□□□ 1.84
MSH5O43196 DHDH-203ENST00000522614 776 ntTSL 5 BASIC26.55■■□□□ 1.84
MSH5O43196 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC26.55■■□□□ 1.84
MSH5O43196 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
MSH5O43196 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC26.55■■□□□ 1.84
MSH5O43196 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC26.55■■□□□ 1.84
MSH5O43196 AC068620.4-201ENST00000636730 1182 ntBASIC26.55■■□□□ 1.84
MSH5O43196 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
MSH5O43196 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
MSH5O43196 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
MSH5O43196 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
MSH5O43196 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
MSH5O43196 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
MSH5O43196 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC26.55■■□□□ 1.84
MSH5O43196 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC26.55■■□□□ 1.84
MSH5O43196 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC26.55■■□□□ 1.84
MSH5O43196 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH5O43196 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC26.54■■□□□ 1.84
MSH5O43196 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
MSH5O43196 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC26.54■■□□□ 1.84
MSH5O43196 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH5O43196 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC26.54■■□□□ 1.84
MSH5O43196 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC26.54■■□□□ 1.84
MSH5O43196 AC010740.1-201ENST00000417035 684 ntBASIC26.54■■□□□ 1.84
MSH5O43196 AC245052.3-201ENST00000450182 901 ntBASIC26.54■■□□□ 1.84
MSH5O43196 AL049829.1-201ENST00000465411 156 ntBASIC26.54■■□□□ 1.84
MSH5O43196 AC108718.1-201ENST00000482382 554 ntTSL 4 BASIC26.54■■□□□ 1.84
MSH5O43196 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
MSH5O43196 AL023875.1-201ENST00000640777 796 ntBASIC26.54■■□□□ 1.84
MSH5O43196 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC26.54■■□□□ 1.84
MSH5O43196 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH5O43196 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH5O43196 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH5O43196 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC26.54■■□□□ 1.84
MSH5O43196 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC26.54■■□□□ 1.84
MSH5O43196 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
MSH5O43196 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH5O43196 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
MSH5O43196 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC26.53■■□□□ 1.84
MSH5O43196 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC26.53■■□□□ 1.84
MSH5O43196 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC26.53■■□□□ 1.84
MSH5O43196 HES2-205ENST00000487437 968 ntTSL 3 BASIC26.53■■□□□ 1.84
MSH5O43196 AC122134.1-202ENST00000569111 1201 ntBASIC26.53■■□□□ 1.84
MSH5O43196 MIR4785-201ENST00000585005 73 ntBASIC26.53■■□□□ 1.84
MSH5O43196 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
MSH5O43196 AP001412.1-201ENST00000608405 714 ntBASIC26.53■■□□□ 1.84
MSH5O43196 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC26.53■■□□□ 1.84
MSH5O43196 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC26.53■■□□□ 1.84
MSH5O43196 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
MSH5O43196 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
MSH5O43196 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH5O43196 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC26.53■■□□□ 1.84
MSH5O43196 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH5O43196 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH5O43196 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
MSH5O43196 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC26.52■■□□□ 1.84
MSH5O43196 GCK-205ENST00000437084 1385 ntTSL 5 BASIC26.52■■□□□ 1.84
MSH5O43196 VMO1-204ENST00000441199 741 ntTSL 2 BASIC26.52■■□□□ 1.84
MSH5O43196 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
MSH5O43196 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC26.52■■□□□ 1.84
MSH5O43196 MTND2P38-201ENST00000522536 667 ntBASIC26.52■■□□□ 1.84
MSH5O43196 NXN-202ENST00000537628 1340 ntTSL 3 BASIC26.52■■□□□ 1.84
MSH5O43196 AC022087.1-201ENST00000558372 612 ntTSL 3 BASIC26.52■■□□□ 1.84
MSH5O43196 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC26.52■■□□□ 1.84
MSH5O43196 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
MSH5O43196 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC26.52■■□□□ 1.84
MSH5O43196 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC26.52■■□□□ 1.84
MSH5O43196 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH5O43196 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC26.51■■□□□ 1.84
MSH5O43196 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH5O43196 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
MSH5O43196 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH5O43196 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH5O43196 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC26.51■■□□□ 1.83
MSH5O43196 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH5O43196 ARMC10P1-201ENST00000313754 855 ntBASIC26.51■■□□□ 1.83
MSH5O43196 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
MSH5O43196 BOLL-205ENST00000433157 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH5O43196 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
MSH5O43196 THEM4-205ENST00000489410 643 ntTSL 2 BASIC26.51■■□□□ 1.83
MSH5O43196 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH5O43196 LY6E-205ENST00000519611 635 ntTSL 3 BASIC26.51■■□□□ 1.83
MSH5O43196 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC26.51■■□□□ 1.83
MSH5O43196 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC26.51■■□□□ 1.83
MSH5O43196 PPOX-219ENST00000544598 813 ntTSL 2 BASIC26.51■■□□□ 1.83
MSH5O43196 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms