Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC016180.1-201ENST00000567945 403 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC010547.7-201ENST00000570323 333 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AL352984.2-201ENST00000611153 546 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC004477.3-201ENST00000614061 590 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 PSG10P-201ENST00000501199 1500 ntBASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HDDC3Q8N4P3 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 OLMALINC-203ENST00000641087 3779 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 MIR143-201ENST00000385300 106 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 NME1P1-201ENST00000420914 382 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 FTLP8-201ENST00000446770 267 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 YWHAEP1-201ENST00000453697 763 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 TSACC-207ENST00000470342 601 ntTSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC105420.1-201ENST00000504389 582 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 RNA5SP438-201ENST00000516561 112 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 RNA5SP400-201ENST00000517155 111 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC020978.7-201ENST00000575953 1187 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC067852.5-201ENST00000589299 310 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC096708.4-201ENST00000620563 552 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC138627.1-204ENST00000641894 765 ntBASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HDDC3Q8N4P3 AC022905.1-201ENST00000503430 3048 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 RBPJP7-201ENST00000442803 1447 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 RBPJP5-201ENST00000449433 1447 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 SHQ1P1-201ENST00000437111 1544 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 RNFT1P3-201ENST00000340898 1052 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 RNA5SP273-201ENST00000362484 113 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 U3.25-201ENST00000391209 220 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AL096800.1-201ENST00000405326 893 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 SDHDP6-201ENST00000414693 480 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 CYP4F30P-202ENST00000420048 405 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 ZNF619P1-201ENST00000446539 752 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 AC005077.1-201ENST00000449226 375 ntBASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC6.17□□□□□ -1.42
HDDC3Q8N4P3 RN7SL284P-201ENST00000498823 275 ntBASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms