Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL139158.1-201ENST00000424719 340 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXA1P55317 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.61□□□□□ -1.51
FOXA1P55317 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.61□□□□□ -1.51
FOXA1P55317 AC007383.1-201ENST00000445875 636 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXA1P55317 GEMIN2P1-201ENST00000454246 752 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AC093166.4-201ENST00000457867 318 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 RNU1-88P-201ENST00000459274 128 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AC098818.1-201ENST00000478593 252 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 RN7SL568P-201ENST00000493069 298 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.61□□□□□ -1.51
FOXA1P55317 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.61□□□□□ -1.51
FOXA1P55317 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
FOXA1P55317 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXA1P55317 AC021146.10-201ENST00000515628 706 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.61□□□□□ -1.51
FOXA1P55317 IGLV3-30-201ENST00000524362 298 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXA1P55317 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXA1P55317 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXA1P55317 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.61□□□□□ -1.51
FOXA1P55317 AC011500.1-201ENST00000601963 469 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AC005479.3-201ENST00000602790 431 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AC124916.2-201ENST00000604416 224 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AC005828.7-201ENST00000607331 556 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.61□□□□□ -1.51
FOXA1P55317 AL035661.1-201ENST00000620459 1144 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 MIR6813-201ENST00000621638 56 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.61□□□□□ -1.51
FOXA1P55317 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.61□□□□□ -1.51
FOXA1P55317 AP001153.1-201ENST00000641024 338 ntBASIC5.61□□□□□ -1.51
FOXA1P55317 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXA1P55317 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXA1P55317 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
FOXA1P55317 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXA1P55317 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXA1P55317 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
FOXA1P55317 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
FOXA1P55317 RNFT1P3-201ENST00000340898 1052 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 RPL11P3-201ENST00000395256 523 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 BX276092.6-201ENST00000430476 250 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXA1P55317 RPL5P7-201ENST00000444235 813 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXA1P55317 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 AC097463.1-201ENST00000447288 481 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 BX276092.8-201ENST00000455722 250 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 Z83838.1-202ENST00000456225 839 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 RN7SKP238-201ENST00000516483 249 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 AC009879.1-201ENST00000520029 839 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 OR8Q1P-201ENST00000526467 655 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 OR4A41P-201ENST00000533053 928 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXA1P55317 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXA1P55317 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXA1P55317 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXA1P55317 RN7SL230P-201ENST00000580835 303 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXA1P55317 AL353729.2-201ENST00000605859 1249 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 AC244100.4-201ENST00000617747 388 ntBASIC5.6□□□□□ -1.51
FOXA1P55317 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXA1P55317 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXA1P55317 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXA1P55317 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXA1P55317 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
FOXA1P55317 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
FOXA1P55317 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.59□□□□□ -1.51
FOXA1P55317 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
FOXA1P55317 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
FOXA1P55317 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms