Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL590399.2-201ENST00000427536 309 ntBASIC5.65□□□□□ -1.5
SOX3P41225 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.65□□□□□ -1.5
SOX3P41225 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.65□□□□□ -1.5
SOX3P41225 LSM3P4-201ENST00000502948 309 ntBASIC5.65□□□□□ -1.5
SOX3P41225 AC008945.1-201ENST00000505144 499 ntBASIC5.65□□□□□ -1.5
SOX3P41225 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.65□□□□□ -1.5
SOX3P41225 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
SOX3P41225 RNU6-751P-201ENST00000516382 101 ntBASIC5.65□□□□□ -1.5
SOX3P41225 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.65□□□□□ -1.5
SOX3P41225 AC027369.2-201ENST00000528030 440 ntBASIC5.65□□□□□ -1.5
SOX3P41225 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.65□□□□□ -1.5
SOX3P41225 AC079905.1-201ENST00000549280 475 ntBASIC5.65□□□□□ -1.5
SOX3P41225 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.65□□□□□ -1.5
SOX3P41225 NDUFA5P11-201ENST00000567995 343 ntBASIC5.65□□□□□ -1.5
SOX3P41225 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.65□□□□□ -1.5
SOX3P41225 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SOX3P41225 AL138895.2-201ENST00000603019 178 ntBASIC5.65□□□□□ -1.5
SOX3P41225 AC027334.1-201ENST00000603257 310 ntBASIC5.65□□□□□ -1.5
SOX3P41225 AC093388.1-201ENST00000609166 430 ntBASIC5.65□□□□□ -1.5
SOX3P41225 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SOX3P41225 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.65□□□□□ -1.5
SOX3P41225 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.65□□□□□ -1.5
SOX3P41225 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.65□□□□□ -1.5
SOX3P41225 AC096921.2-201ENST00000561507 1916 ntBASIC5.65□□□□□ -1.51
SOX3P41225 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.65□□□□□ -1.51
SOX3P41225 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SOX3P41225 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.65□□□□□ -1.51
SOX3P41225 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
SOX3P41225 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SOX3P41225 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SOX3P41225 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.65□□□□□ -1.51
SOX3P41225 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.65□□□□□ -1.51
SOX3P41225 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.65□□□□□ -1.51
SOX3P41225 MIPEPP2-201ENST00000422560 1819 ntBASIC5.64□□□□□ -1.51
SOX3P41225 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SOX3P41225 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 MTCO1P28-201ENST00000574177 1528 ntBASIC5.64□□□□□ -1.51
SOX3P41225 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SOX3P41225 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.64□□□□□ -1.51
SOX3P41225 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.64□□□□□ -1.51
SOX3P41225 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.64□□□□□ -1.51
SOX3P41225 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.64□□□□□ -1.51
SOX3P41225 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 DNAJA1P5-201ENST00000440278 943 ntBASIC5.64□□□□□ -1.51
SOX3P41225 RPS10P18-201ENST00000442662 495 ntBASIC5.64□□□□□ -1.51
SOX3P41225 ZNF619P1-201ENST00000446539 752 ntBASIC5.64□□□□□ -1.51
SOX3P41225 FTLP8-201ENST00000446770 267 ntBASIC5.64□□□□□ -1.51
SOX3P41225 NDUFA5P5-201ENST00000468361 342 ntBASIC5.64□□□□□ -1.51
SOX3P41225 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.64□□□□□ -1.51
SOX3P41225 RNA5SP340-201ENST00000517132 107 ntBASIC5.64□□□□□ -1.51
SOX3P41225 AC021733.2-201ENST00000518830 497 ntBASIC5.64□□□□□ -1.51
SOX3P41225 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.64□□□□□ -1.51
SOX3P41225 RNU4ATAC-201ENST00000580972 127 ntBASIC5.64□□□□□ -1.51
SOX3P41225 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.64□□□□□ -1.51
SOX3P41225 AC090953.1-201ENST00000604305 1092 ntBASIC5.64□□□□□ -1.51
SOX3P41225 AL136097.3-201ENST00000611097 505 ntBASIC5.64□□□□□ -1.51
SOX3P41225 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 AL031658.2-201ENST00000616850 651 ntBASIC5.64□□□□□ -1.51
SOX3P41225 AL359742.1-201ENST00000622497 540 ntBASIC5.64□□□□□ -1.51
SOX3P41225 AC073488.3-201ENST00000631611 778 ntBASIC5.64□□□□□ -1.51
SOX3P41225 AP001153.1-201ENST00000641024 338 ntBASIC5.64□□□□□ -1.51
SOX3P41225 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SOX3P41225 RBMY1HP-201ENST00000382759 1389 ntBASIC5.64□□□□□ -1.51
SOX3P41225 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SOX3P41225 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SOX3P41225 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.64□□□□□ -1.51
SOX3P41225 WDR95P-201ENST00000425638 1542 ntBASIC5.64□□□□□ -1.51
SOX3P41225 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.63□□□□□ -1.51
SOX3P41225 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.63□□□□□ -1.51
SOX3P41225 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SOX3P41225 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SOX3P41225 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.63□□□□□ -1.51
SOX3P41225 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.63□□□□□ -1.51
SOX3P41225 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms