Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC027575.3-201ENST00000583058 2747 ntBASIC6.27□□□□□ -1.41
MSX2P35548 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX2P35548 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 AL161901.1-201ENST00000624954 3425 ntBASIC6.27□□□□□ -1.41
MSX2P35548 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
MSX2P35548 AC010624.4-201ENST00000597606 1351 ntBASIC6.27□□□□□ -1.41
MSX2P35548 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
MSX2P35548 ZNF402P-201ENST00000404435 3100 ntBASIC6.27□□□□□ -1.41
MSX2P35548 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX2P35548 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX2P35548 AC011369.2-201ENST00000624423 1567 ntBASIC6.27□□□□□ -1.41
MSX2P35548 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX2P35548 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX2P35548 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.26□□□□□ -1.41
MSX2P35548 AC099786.3-201ENST00000565735 1410 ntBASIC6.26□□□□□ -1.41
MSX2P35548 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
MSX2P35548 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
MSX2P35548 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 FUNDC2P3-201ENST00000334716 533 ntBASIC6.26□□□□□ -1.41
MSX2P35548 RNU5B-4P-201ENST00000363508 111 ntBASIC6.26□□□□□ -1.41
MSX2P35548 RNU1-55P-201ENST00000365510 158 ntBASIC6.26□□□□□ -1.41
MSX2P35548 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 UBE2V1P11-201ENST00000411559 285 ntBASIC6.26□□□□□ -1.41
MSX2P35548 UBE2V1P9-201ENST00000414760 368 ntBASIC6.26□□□□□ -1.41
MSX2P35548 TRIM60P17-201ENST00000415181 719 ntBASIC6.26□□□□□ -1.41
MSX2P35548 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX2P35548 NPM1P26-201ENST00000426339 738 ntBASIC6.26□□□□□ -1.41
MSX2P35548 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 AC105052.2-201ENST00000434317 794 ntBASIC6.26□□□□□ -1.41
MSX2P35548 MTND2P40-201ENST00000436718 841 ntBASIC6.26□□□□□ -1.41
MSX2P35548 FABP5P3-201ENST00000437960 408 ntBASIC6.26□□□□□ -1.41
MSX2P35548 Z84478.1-201ENST00000438230 1219 ntBASIC6.26□□□□□ -1.41
MSX2P35548 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX2P35548 Z99127.2-201ENST00000441426 334 ntBASIC6.26□□□□□ -1.41
MSX2P35548 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX2P35548 BX323845.2-201ENST00000458382 234 ntBASIC6.26□□□□□ -1.41
MSX2P35548 AC008620.1-201ENST00000468453 592 ntBASIC6.26□□□□□ -1.41
MSX2P35548 RPL23AP64-201ENST00000469465 435 ntBASIC6.26□□□□□ -1.41
MSX2P35548 RN7SL282P-201ENST00000479676 297 ntBASIC6.26□□□□□ -1.41
MSX2P35548 OR5H3P-201ENST00000502817 919 ntBASIC6.26□□□□□ -1.41
MSX2P35548 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC6.26□□□□□ -1.41
MSX2P35548 SNX18P25-201ENST00000510539 758 ntBASIC6.26□□□□□ -1.41
MSX2P35548 HMGB1P47-201ENST00000511281 589 ntBASIC6.26□□□□□ -1.41
MSX2P35548 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 SEC11B-201ENST00000518383 499 ntBASIC6.26□□□□□ -1.41
MSX2P35548 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX2P35548 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 OR4A17P-201ENST00000526032 904 ntBASIC6.26□□□□□ -1.41
MSX2P35548 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX2P35548 OR4A6P-201ENST00000534364 970 ntBASIC6.26□□□□□ -1.41
MSX2P35548 AC140063.1-201ENST00000541343 259 ntBASIC6.26□□□□□ -1.41
MSX2P35548 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC6.26□□□□□ -1.41
MSX2P35548 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 NPM1P5-201ENST00000557228 838 ntBASIC6.26□□□□□ -1.41
MSX2P35548 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC6.26□□□□□ -1.41
MSX2P35548 AP003115.1-201ENST00000569849 463 ntBASIC6.26□□□□□ -1.41
MSX2P35548 CCDC58P1-201ENST00000578567 430 ntBASIC6.26□□□□□ -1.41
MSX2P35548 AC005244.1-201ENST00000582566 339 ntBASIC6.26□□□□□ -1.41
MSX2P35548 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 AC005242.1-201ENST00000585658 438 ntBASIC6.26□□□□□ -1.41
MSX2P35548 CCDC58P3-201ENST00000590792 430 ntBASIC6.26□□□□□ -1.41
MSX2P35548 AC124856.1-201ENST00000600819 896 ntBASIC6.26□□□□□ -1.41
MSX2P35548 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX2P35548 AC024255.1-201ENST00000614376 102 ntBASIC6.26□□□□□ -1.41
MSX2P35548 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC6.26□□□□□ -1.41
MSX2P35548 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 AC119674.1-213ENST00000641177 1386 ntBASIC6.26□□□□□ -1.41
MSX2P35548 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX2P35548 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX2P35548 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 SSXP3-201ENST00000442971 1300 ntBASIC6.25□□□□□ -1.41
MSX2P35548 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 AC015799.1-201ENST00000622996 3122 ntBASIC6.25□□□□□ -1.41
MSX2P35548 AC110373.1-201ENST00000505994 3505 ntBASIC6.25□□□□□ -1.41
MSX2P35548 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX2P35548 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
MSX2P35548 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX2P35548 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
MSX2P35548 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX2P35548 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms