Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC245060.4-201ENST00000413293 1121 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 SDHDP6-201ENST00000414693 480 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.85□□□□□ -1.47
HOXC4P09017 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HOXC4P09017 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXC4P09017 CUBNP2-201ENST00000443534 1139 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 REG1CP-206ENST00000447469 496 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC4P09017 RPS27AP2-201ENST00000457576 465 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 RN7SL273P-201ENST00000481561 299 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 AL035690.1-201ENST00000490892 383 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 AC008945.1-201ENST00000505144 499 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC4P09017 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXC4P09017 HMGN2P36-201ENST00000529541 409 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.85□□□□□ -1.47
HOXC4P09017 AC093524.1-201ENST00000564266 1094 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.85□□□□□ -1.47
HOXC4P09017 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC4P09017 AC009237.12-201ENST00000604755 742 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 AL355974.3-201ENST00000617383 467 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 AL445670.1-201ENST00000618889 801 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 SNORA17.5-201ENST00000630429 132 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 AC103703.1-201ENST00000634783 663 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 AC099654.11-201ENST00000638857 294 ntBASIC5.85□□□□□ -1.47
HOXC4P09017 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
HOXC4P09017 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC4P09017 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC4P09017 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC4P09017 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
HOXC4P09017 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC4P09017 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC4P09017 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HOXC4P09017 AC091305.2-201ENST00000624049 1576 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC4P09017 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC4P09017 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
HOXC4P09017 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXC4P09017 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC4P09017 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC4P09017 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC4P09017 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
HOXC4P09017 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
HOXC4P09017 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC4P09017 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.84□□□□□ -1.47
HOXC4P09017 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXC4P09017 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 MIR375-201ENST00000362103 64 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 RNA5SP500-201ENST00000364486 119 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXC4P09017 AC015977.1-201ENST00000418887 292 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 AK4P4-201ENST00000419465 646 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 NAP1L4P2-201ENST00000425958 899 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 BX323845.3-201ENST00000428215 527 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 AL731534.1-201ENST00000434711 269 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.84□□□□□ -1.47
HOXC4P09017 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.84□□□□□ -1.47
HOXC4P09017 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 OR51A1P-201ENST00000511110 946 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
HOXC4P09017 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXC4P09017 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXC4P09017 AP001496.3-201ENST00000580230 913 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXC4P09017 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 AL512356.3-201ENST00000623005 461 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 AC018659.2-201ENST00000624690 715 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXC4P09017 AL355480.1-201ENST00000629041 99 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 AC008691.1-209ENST00000642094 814 ntBASIC5.84□□□□□ -1.47
HOXC4P09017 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC4P09017 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
HOXC4P09017 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXC4P09017 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXC4P09017 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
HOXC4P09017 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.48
HOXC4P09017 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
HOXC4P09017 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HOXC4P09017 AC114876.1-201ENST00000490962 1366 ntBASIC5.83□□□□□ -1.48
HOXC4P09017 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC4P09017 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC4P09017 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC4P09017 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC4P09017 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
HOXC4P09017 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC4P09017 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC4P09017 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms