Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 SLC20A1P1-201ENST00000413906 956 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 RPS3P2-201ENST00000421346 701 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AL035660.1-201ENST00000422041 222 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 IPPKP1-201ENST00000422501 768 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AL512637.1-201ENST00000439523 1231 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AC084754.1-201ENST00000463466 464 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 IGLV3-30-201ENST00000524362 298 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AC015982.1-201ENST00000608113 465 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AL139099.4-201ENST00000614802 114 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AC087269.2-201ENST00000641764 975 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 AL117378.2-201ENST00000622916 1337 ntBASIC5.97□□□□□ -1.45
LHX3Q9UBR4 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.97□□□□□ -1.45
LHX3Q9UBR4 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
LHX3Q9UBR4 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
LHX3Q9UBR4 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.45
LHX3Q9UBR4 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
LHX3Q9UBR4 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.45
LHX3Q9UBR4 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.96□□□□□ -1.45
LHX3Q9UBR4 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.45
LHX3Q9UBR4 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.96□□□□□ -1.45
LHX3Q9UBR4 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC5.96□□□□□ -1.45
LHX3Q9UBR4 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 OR4G1P-202ENST00000641173 1788 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 RN7SKP29-201ENST00000410957 272 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AL365220.1-201ENST00000432923 399 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AC011476.1-201ENST00000466725 307 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 TOMM22P4-201ENST00000511318 336 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AC253576.1-201ENST00000511645 1156 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 IGKV2-4-201ENST00000523070 340 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AC100767.2-201ENST00000604840 693 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AP005431.1-201ENST00000618479 319 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AL445670.1-201ENST00000618889 801 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AC069234.4-201ENST00000621276 412 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 SNX18P12-201ENST00000624821 759 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 AC005224.3-201ENST00000584683 2140 ntBASIC5.96□□□□□ -1.46
LHX3Q9UBR4 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 MR1-209ENST00000617803 7584 ntTSL 5 BASIC5.96□□□□□ -1.46
LHX3Q9UBR4 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC022164.1-201ENST00000568767 2673 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 PDZK1P1-202ENST00000425209 1350 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 OR52B3P-201ENST00000314715 928 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms