Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 LINC02019-201ENST00000608605 2060 ntBASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.81□□□□□ -1.48
NUP54Q7Z3B4 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC003973.3-201ENST00000624863 2822 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 RNU6-249P-201ENST00000363016 102 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 LCN1P2-201ENST00000372030 223 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 RN7SKP86-201ENST00000410454 332 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 RNU2-18P-201ENST00000411224 162 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC116036.1-201ENST00000412199 367 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AL139158.1-201ENST00000424719 340 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 IGLV3-4-201ENST00000432300 244 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC112492.2-201ENST00000432774 1030 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC094019.1-201ENST00000434678 472 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC097523.2-201ENST00000435551 652 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AL645936.1-201ENST00000441979 518 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC007386.1-201ENST00000455212 582 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AL117692.1-201ENST00000494283 713 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 OR4D12P-201ENST00000509361 911 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AP003080.1-202ENST00000526526 915 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC122134.1-201ENST00000565664 1104 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 MTND2P13-201ENST00000577438 1039 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AC092944.2-201ENST00000605443 889 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AL359091.2-201ENST00000609303 556 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 uc_338.29-201ENST00000615099 168 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.8□□□□□ -1.48
NUP54Q7Z3B4 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 AC090181.3-201ENST00000624777 1514 ntBASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 OR7E25P-201ENST00000344844 931 ntBASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 OR11H13P-201ENST00000359695 979 ntBASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 RN7SKP237-201ENST00000364663 301 ntBASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 RNA5SP115-201ENST00000411160 107 ntBASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 TMA16P2-201ENST00000413187 601 ntBASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 AC010086.1-201ENST00000437359 1052 ntBASIC5.79□□□□□ -1.48
NUP54Q7Z3B4 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms