Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC7.41□□□□□ -1.22
SOX4Q06945 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC7.41□□□□□ -1.22
SOX4Q06945 FANCD2P2-201ENST00000437591 1400 ntBASIC7.41□□□□□ -1.22
SOX4Q06945 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SOX4Q06945 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SOX4Q06945 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
SOX4Q06945 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SOX4Q06945 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
SOX4Q06945 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC7.41□□□□□ -1.22
SOX4Q06945 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC7.41□□□□□ -1.22
SOX4Q06945 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC7.41□□□□□ -1.22
SOX4Q06945 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SOX4Q06945 DDX43P1-201ENST00000510713 1763 ntBASIC7.41□□□□□ -1.22
SOX4Q06945 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
SOX4Q06945 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
SOX4Q06945 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
SOX4Q06945 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
SOX4Q06945 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC7.4□□□□□ -1.22
SOX4Q06945 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
SOX4Q06945 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SOX4Q06945 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
SOX4Q06945 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SOX4Q06945 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SOX4Q06945 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SOX4Q06945 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
SOX4Q06945 AL008638.3-201ENST00000623027 5182 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC7.4□□□□□ -1.22
SOX4Q06945 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SOX4Q06945 RNFT1P3-201ENST00000340898 1052 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SOX4Q06945 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
SOX4Q06945 RNY3P14-201ENST00000384309 102 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 MIR551B-201ENST00000384984 96 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 CXADRP1-201ENST00000398098 1095 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 AL034417.1-201ENST00000399343 800 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 AL590635.1-201ENST00000406314 586 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC246680.2-201ENST00000422106 389 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC244035.1-201ENST00000430042 390 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 AL590128.1-201ENST00000433407 286 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 MTCO1P52-201ENST00000433928 531 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 GTF2IP14-201ENST00000441415 586 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 RPL23AP28-201ENST00000448062 470 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.22
SOX4Q06945 RN7SL654P-201ENST00000479178 292 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC097494.1-201ENST00000512898 732 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 NDUFB4P12-201ENST00000513465 390 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC7.4□□□□□ -1.22
SOX4Q06945 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC109635.3-201ENST00000529536 185 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 AC140063.1-201ENST00000541343 259 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC002400.1-201ENST00000569310 726 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC7.4□□□□□ -1.22
SOX4Q06945 MIR3915-201ENST00000578518 97 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
SOX4Q06945 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC7.4□□□□□ -1.22
SOX4Q06945 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 AL136363.2-201ENST00000604173 851 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC012409.3-201ENST00000611343 981 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 AC061999.1-201ENST00000624454 177 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 AL357140.4-201ENST00000636827 412 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC7.4□□□□□ -1.22
SOX4Q06945 NEK2P4-201ENST00000425793 1329 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.4□□□□□ -1.22
SOX4Q06945 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.4□□□□□ -1.22
SOX4Q06945 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC7.4□□□□□ -1.23
SOX4Q06945 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC7.4□□□□□ -1.23
SOX4Q06945 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.23
SOX4Q06945 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC7.4□□□□□ -1.23
SOX4Q06945 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
SOX4Q06945 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.23
SOX4Q06945 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
SOX4Q06945 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
SOX4Q06945 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
SOX4Q06945 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
SOX4Q06945 AC005614.1-201ENST00000598952 3653 ntBASIC7.4□□□□□ -1.23
SOX4Q06945 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
SOX4Q06945 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
SOX4Q06945 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC7.4□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms