Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.88□□□□□ -1.31
CCNA1P78396 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CCNA1P78396 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CCNA1P78396 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
CCNA1P78396 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CCNA1P78396 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCNA1P78396 AC027279.4-201ENST00000624371 2072 ntBASIC6.88□□□□□ -1.31
CCNA1P78396 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 AC090220.1-201ENST00000593078 1699 ntBASIC6.87□□□□□ -1.31
CCNA1P78396 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.87□□□□□ -1.31
CCNA1P78396 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 RN7SKP278-201ENST00000410504 342 ntBASIC6.87□□□□□ -1.31
CCNA1P78396 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.87□□□□□ -1.31
CCNA1P78396 NMD3P2-201ENST00000421815 761 ntBASIC6.87□□□□□ -1.31
CCNA1P78396 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.87□□□□□ -1.31
CCNA1P78396 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.87□□□□□ -1.31
CCNA1P78396 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC6.87□□□□□ -1.31
CCNA1P78396 RPL5P12-201ENST00000477071 851 ntBASIC6.87□□□□□ -1.31
CCNA1P78396 AC099521.1-201ENST00000482557 334 ntBASIC6.87□□□□□ -1.31
CCNA1P78396 AC008629.2-201ENST00000503783 483 ntBASIC6.87□□□□□ -1.31
CCNA1P78396 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.87□□□□□ -1.31
CCNA1P78396 MIR3189-201ENST00000578735 73 ntBASIC6.87□□□□□ -1.31
CCNA1P78396 RNU4ATAC-201ENST00000580972 127 ntBASIC6.87□□□□□ -1.31
CCNA1P78396 SUMO2P15-201ENST00000604285 278 ntBASIC6.87□□□□□ -1.31
CCNA1P78396 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.87□□□□□ -1.31
CCNA1P78396 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCNA1P78396 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.86□□□□□ -1.31
CCNA1P78396 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 NR1H5P-201ENST00000452683 1377 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 HDAC1P2-201ENST00000453661 1398 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.86□□□□□ -1.31
CCNA1P78396 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 AL591848.4-201ENST00000567832 3472 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC6.86□□□□□ -1.31
CCNA1P78396 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 RNA5SP500-201ENST00000364486 119 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 NME1P1-201ENST00000420914 382 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.86□□□□□ -1.31
CCNA1P78396 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 AC073594.1-201ENST00000462065 364 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.86□□□□□ -1.31
CCNA1P78396 AC074087.1-201ENST00000512059 724 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.86□□□□□ -1.31
CCNA1P78396 GTF2IP11-201ENST00000526931 420 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.86□□□□□ -1.31
CCNA1P78396 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.86□□□□□ -1.31
CCNA1P78396 IGBP1P1-201ENST00000554337 1009 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC6.86□□□□□ -1.31
CCNA1P78396 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 AC015802.2-201ENST00000589690 189 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
CCNA1P78396 AP004289.1-201ENST00000436307 2205 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
CCNA1P78396 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 FGG-205ENST00000407946 1636 ntTSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.86□□□□□ -1.31
CCNA1P78396 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
CCNA1P78396 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.86□□□□□ -1.31
CCNA1P78396 AC099654.3-201ENST00000447087 1546 ntBASIC6.86□□□□□ -1.31
CCNA1P78396 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCNA1P78396 Z83820.1-201ENST00000456978 1499 ntBASIC6.85□□□□□ -1.31
CCNA1P78396 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.85□□□□□ -1.31
CCNA1P78396 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
CCNA1P78396 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
CCNA1P78396 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
CCNA1P78396 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
CCNA1P78396 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCNA1P78396 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
CCNA1P78396 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
CCNA1P78396 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms