Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RN7SKP238-201ENST00000516483 249 ntBASIC5.67□□□□□ -1.5
SOX3P41225 RNA5SP434-201ENST00000516647 121 ntBASIC5.67□□□□□ -1.5
SOX3P41225 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX3P41225 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX3P41225 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX3P41225 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX3P41225 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX3P41225 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX3P41225 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX3P41225 AC068768.2-201ENST00000602352 343 ntBASIC5.67□□□□□ -1.5
SOX3P41225 AC015849.6-201ENST00000605454 474 ntBASIC5.67□□□□□ -1.5
SOX3P41225 AP005212.4-201ENST00000614206 710 ntBASIC5.67□□□□□ -1.5
SOX3P41225 AC022960.2-201ENST00000616300 666 ntBASIC5.67□□□□□ -1.5
SOX3P41225 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX3P41225 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX3P41225 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 AC022325.1-201ENST00000502748 2199 ntBASIC5.67□□□□□ -1.5
SOX3P41225 AC024587.1-201ENST00000505925 2157 ntBASIC5.67□□□□□ -1.5
SOX3P41225 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX3P41225 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.67□□□□□ -1.5
SOX3P41225 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.66□□□□□ -1.5
SOX3P41225 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 AC099654.3-201ENST00000447087 1546 ntBASIC5.66□□□□□ -1.5
SOX3P41225 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 RN7SKP275-201ENST00000364626 301 ntBASIC5.66□□□□□ -1.5
SOX3P41225 MIR1282-201ENST00000408865 101 ntBASIC5.66□□□□□ -1.5
SOX3P41225 RN7SKP151-201ENST00000410230 316 ntBASIC5.66□□□□□ -1.5
SOX3P41225 RPL35AP31-201ENST00000418340 337 ntBASIC5.66□□□□□ -1.5
SOX3P41225 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 KCTD9P1-201ENST00000430462 1167 ntBASIC5.66□□□□□ -1.5
SOX3P41225 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 ATP5LP2-201ENST00000440646 311 ntBASIC5.66□□□□□ -1.5
SOX3P41225 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 SEPT14P12-201ENST00000442280 560 ntBASIC5.66□□□□□ -1.5
SOX3P41225 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 PPIAP27-201ENST00000453800 265 ntBASIC5.66□□□□□ -1.5
SOX3P41225 AC073594.1-201ENST00000462065 364 ntBASIC5.66□□□□□ -1.5
SOX3P41225 AC023194.2-201ENST00000465398 406 ntBASIC5.66□□□□□ -1.5
SOX3P41225 AC090058.1-201ENST00000498788 435 ntBASIC5.66□□□□□ -1.5
SOX3P41225 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.66□□□□□ -1.5
SOX3P41225 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.66□□□□□ -1.5
SOX3P41225 AC090826.1-203ENST00000569235 490 ntBASIC5.66□□□□□ -1.5
SOX3P41225 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC5.66□□□□□ -1.5
SOX3P41225 AC005726.4-201ENST00000582858 458 ntBASIC5.66□□□□□ -1.5
SOX3P41225 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 NPIPB1P-202ENST00000588786 828 ntBASIC5.66□□□□□ -1.5
SOX3P41225 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.66□□□□□ -1.5
SOX3P41225 AL137067.2-201ENST00000621202 131 ntBASIC5.66□□□□□ -1.5
SOX3P41225 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX3P41225 AC116667.2-201ENST00000641075 823 ntBASIC5.66□□□□□ -1.5
SOX3P41225 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.66□□□□□ -1.5
SOX3P41225 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 HDAC1P2-201ENST00000453661 1398 ntBASIC5.66□□□□□ -1.5
SOX3P41225 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX3P41225 AL355834.1-201ENST00000556602 3965 ntBASIC5.65□□□□□ -1.5
SOX3P41225 AC008627.1-201ENST00000517511 1704 ntBASIC5.65□□□□□ -1.5
SOX3P41225 AC140134.1-201ENST00000511830 3544 ntBASIC5.65□□□□□ -1.5
SOX3P41225 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.65□□□□□ -1.5
SOX3P41225 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.65□□□□□ -1.5
SOX3P41225 AP002512.4-202ENST00000641599 4530 ntBASIC5.65□□□□□ -1.5
SOX3P41225 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SOX3P41225 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
SOX3P41225 QRSL1P1-201ENST00000400977 1540 ntBASIC5.65□□□□□ -1.5
SOX3P41225 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.65□□□□□ -1.5
SOX3P41225 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.65□□□□□ -1.5
SOX3P41225 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SOX3P41225 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.65□□□□□ -1.5
SOX3P41225 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SOX3P41225 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC5.65□□□□□ -1.5
SOX3P41225 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.65□□□□□ -1.5
SOX3P41225 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.65□□□□□ -1.5
SOX3P41225 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SOX3P41225 AL096800.1-201ENST00000405326 893 ntBASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms