Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RN7SKP59-201ENST00000410520 314 ntBASIC7.76□□□□□ -1.17
HOXC9P31274 TMA16P2-201ENST00000413187 601 ntBASIC7.76□□□□□ -1.17
HOXC9P31274 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC7.76□□□□□ -1.17
HOXC9P31274 OARD1-211ENST00000480585 829 ntTSL 3 BASIC7.76□□□□□ -1.17
HOXC9P31274 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC7.76□□□□□ -1.17
HOXC9P31274 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC7.76□□□□□ -1.17
HOXC9P31274 DCN-210ENST00000547568 823 ntTSL 3 BASIC7.76□□□□□ -1.17
HOXC9P31274 AC096996.1-201ENST00000563813 325 ntBASIC7.76□□□□□ -1.17
HOXC9P31274 MIR1269B-201ENST00000580405 75 ntBASIC7.76□□□□□ -1.17
HOXC9P31274 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC7.76□□□□□ -1.17
HOXC9P31274 MIR132-201ENST00000591554 101 ntBASIC7.76□□□□□ -1.17
HOXC9P31274 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 LRRC37A16P-202ENST00000586022 3725 ntBASIC7.76□□□□□ -1.17
HOXC9P31274 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
HOXC9P31274 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC7.76□□□□□ -1.17
HOXC9P31274 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC7.75□□□□□ -1.17
HOXC9P31274 AC130304.1-201ENST00000622942 2385 ntBASIC7.75□□□□□ -1.17
HOXC9P31274 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
HOXC9P31274 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
HOXC9P31274 RNA5SP234-201ENST00000363916 119 ntBASIC7.75□□□□□ -1.17
HOXC9P31274 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC7.75□□□□□ -1.17
HOXC9P31274 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC7.75□□□□□ -1.17
HOXC9P31274 AC007568.1-201ENST00000422912 471 ntBASIC7.75□□□□□ -1.17
HOXC9P31274 AL731534.1-201ENST00000434711 269 ntBASIC7.75□□□□□ -1.17
HOXC9P31274 AL627308.1-201ENST00000435693 821 ntBASIC7.75□□□□□ -1.17
HOXC9P31274 AL603882.1-201ENST00000463059 681 ntBASIC7.75□□□□□ -1.17
HOXC9P31274 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 RN7SL547P-201ENST00000490793 290 ntBASIC7.75□□□□□ -1.17
HOXC9P31274 NRBF2P4-201ENST00000520874 850 ntBASIC7.75□□□□□ -1.17
HOXC9P31274 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC7.75□□□□□ -1.17
HOXC9P31274 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC7.75□□□□□ -1.17
HOXC9P31274 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HOXC9P31274 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 AC016769.4-201ENST00000616893 535 ntBASIC7.75□□□□□ -1.17
HOXC9P31274 WDR75-207ENST00000631047 270 ntTSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.75□□□□□ -1.17
HOXC9P31274 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC7.75□□□□□ -1.17
HOXC9P31274 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
HOXC9P31274 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC7.75□□□□□ -1.17
HOXC9P31274 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
HOXC9P31274 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
HOXC9P31274 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.74□□□□□ -1.17
HOXC9P31274 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
HOXC9P31274 MIR105-2-201ENST00000385083 81 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
HOXC9P31274 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 GABARAPL3-201ENST00000412799 354 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC7.74□□□□□ -1.17
HOXC9P31274 EIF4A1P7-201ENST00000421800 1220 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC7.74□□□□□ -1.17
HOXC9P31274 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC7.74□□□□□ -1.17
HOXC9P31274 RANP1-206ENST00000455094 651 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 RPL7L1P3-201ENST00000455249 689 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 RN7SL727P-201ENST00000482164 296 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 ATG10-208ENST00000513634 618 ntTSL 2 BASIC7.74□□□□□ -1.17
HOXC9P31274 BX510359.5-201ENST00000515651 304 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 MIR2117-201ENST00000516780 80 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.74□□□□□ -1.17
HOXC9P31274 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
HOXC9P31274 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC7.74□□□□□ -1.17
HOXC9P31274 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC7.74□□□□□ -1.17
HOXC9P31274 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC7.74□□□□□ -1.17
HOXC9P31274 AL355974.3-201ENST00000617383 467 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 AC079776.5-201ENST00000641920 211 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 AC025470.1-201ENST00000510053 2032 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC7.74□□□□□ -1.17
HOXC9P31274 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC7.74□□□□□ -1.17
HOXC9P31274 AC109780.1-201ENST00000451768 1344 ntBASIC7.74□□□□□ -1.17
HOXC9P31274 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC7.74□□□□□ -1.17
HOXC9P31274 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC7.74□□□□□ -1.17
HOXC9P31274 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
HOXC9P31274 MFSD8-219ENST00000641228 2559 ntBASIC7.73□□□□□ -1.17
HOXC9P31274 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC7.73□□□□□ -1.17
HOXC9P31274 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
HOXC9P31274 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HOXC9P31274 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC7.73□□□□□ -1.17
HOXC9P31274 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
HOXC9P31274 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
HOXC9P31274 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
HOXC9P31274 RMRPP5-201ENST00000411156 267 ntBASIC7.73□□□□□ -1.17
HOXC9P31274 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC7.73□□□□□ -1.17
HOXC9P31274 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC7.73□□□□□ -1.17
HOXC9P31274 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC7.73□□□□□ -1.17
HOXC9P31274 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC7.73□□□□□ -1.17
HOXC9P31274 CLUHP1-201ENST00000435012 1190 ntBASIC7.73□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms