Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 CCDC11P1-201ENST00000503137 1162 ntBASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AC105384.2-201ENST00000508433 640 ntBASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 THAP12P9-201ENST00000503971 2360 ntBASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AL355916.1-202ENST00000508827 5103 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AL031595.3-201ENST00000624919 14262 ntBASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AC022893.2-201ENST00000564832 3296 ntBASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 AC112255.1-201ENST00000624070 2493 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 NYAP2-202ENST00000636099 5461 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 MIR223-201ENST00000385204 110 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 CYB5AP4-201ENST00000396692 399 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 CEACAMP9-201ENST00000442990 513 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 RN7SL570P-201ENST00000484405 292 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 IGLV2-34-201ENST00000490007 283 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 AC024589.2-201ENST00000605642 1294 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 SLC9A6-213ENST00000637234 4691 ntTSL 5 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 HMGA1P8-201ENST00000414130 321 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 PGAM1P13-201ENST00000507497 754 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 AC091953.3-201ENST00000623220 236 ntBASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC7.47□□□□□ -1.21
SHANK3Q9BYB0 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
SHANK3Q9BYB0 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
SHANK3Q9BYB0 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
SHANK3Q9BYB0 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC7.46□□□□□ -1.21
SHANK3Q9BYB0 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC7.46□□□□□ -1.21
SHANK3Q9BYB0 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
SHANK3Q9BYB0 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC7.46□□□□□ -1.21
SHANK3Q9BYB0 ZNF658B-201ENST00000602828 3408 ntBASIC7.46□□□□□ -1.21
SHANK3Q9BYB0 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
SHANK3Q9BYB0 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 RNA5SP335-201ENST00000363817 110 ntBASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 RN7SL97P-201ENST00000486780 299 ntBASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 AC087783.2-201ENST00000605070 562 ntBASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC7.46□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms