Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC091193.1-201ENST00000604640 448 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC073592.6-201ENST00000624271 415 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AL356317.1-201ENST00000396110 1436 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 ALDH7A1P4-201ENST00000412255 178 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 TRIM60P17-201ENST00000415181 719 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 CYP4F30P-202ENST00000420048 405 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 RPSAP65-201ENST00000429660 595 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AC105918.1-201ENST00000474399 838 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 MARK2P8-201ENST00000476069 952 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 RPL12P30-201ENST00000488389 499 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 UGT2A3P7-201ENST00000510485 734 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 PRMT5P1-201ENST00000514351 598 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AC008676.3-201ENST00000521237 435 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AC006924.1-201ENST00000610750 559 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AC107905.1-201ENST00000616204 426 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 CASC22-202ENST00000628396 802 ntTSL 5 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 AC119674.1-213ENST00000641177 1386 ntBASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC8.07□□□□□ -1.12
CHMP4AQ9BY43 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 CTNNA1P1-201ENST00000515849 2728 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 RNA5SP346-201ENST00000363541 121 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AL035422.1-201ENST00000414193 397 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AC130360.1-201ENST00000425489 1117 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AC113412.1-201ENST00000425840 504 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 OR3D1P-201ENST00000438288 955 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AL590004.3-202ENST00000445883 451 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 GBA3-201ENST00000503442 1232 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 PSMA2P2-201ENST00000504319 686 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 HAUS1P1-201ENST00000505275 832 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 RNA5SP206-201ENST00000516703 121 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AC130365.2-201ENST00000525882 1201 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 MIR4502-201ENST00000580432 81 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 MIR4701-201ENST00000583094 63 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AL080312.2-201ENST00000613001 630 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 AL391261.1-201ENST00000555712 1479 ntBASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CHMP4AQ9BY43 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC8.05□□□□□ -1.12
CHMP4AQ9BY43 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC8.05□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms