Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 KCTD9P6-201ENST00000522306 950 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC068305.2-201ENST00000550567 1205 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 HMGN2P47-201ENST00000559378 272 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC233702.7-202ENST00000582941 211 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC087468.1-201ENST00000604365 630 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC022467.1-201ENST00000614738 749 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 CDY5P-201ENST00000411487 1580 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 CDY9P-201ENST00000451397 1580 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 AC008627.1-201ENST00000517511 1704 ntBASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HDDC3Q8N4P3 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.21□□□□□ -1.41
HDDC3Q8N4P3 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.21□□□□□ -1.41
HDDC3Q8N4P3 AC140479.2-201ENST00000421567 3130 ntBASIC6.21□□□□□ -1.41
HDDC3Q8N4P3 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
HDDC3Q8N4P3 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
HDDC3Q8N4P3 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
HDDC3Q8N4P3 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
HDDC3Q8N4P3 MAPK10-287ENST00000641217 3037 ntBASIC6.21□□□□□ -1.41
HDDC3Q8N4P3 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.21□□□□□ -1.41
HDDC3Q8N4P3 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC062029.1-202ENST00000606164 3651 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 OR52B3P-201ENST00000314715 928 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 RN7SKP286-201ENST00000410894 299 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 RPL35AP31-201ENST00000418340 337 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 GAPDHP23-201ENST00000444823 993 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC104849.1-201ENST00000462623 405 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AP002371.1-201ENST00000463604 433 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC011476.1-201ENST00000466725 307 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC008638.1-201ENST00000506035 866 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 RNA5SP116-201ENST00000516132 98 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 IGHV1-14-201ENST00000523391 241 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 EIF4EP5-201ENST00000528228 640 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 MIR4301-201ENST00000577203 66 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AL683813.2-201ENST00000605245 502 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC012254.5-201ENST00000623573 478 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC073488.3-201ENST00000631611 778 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 PARP4P1-201ENST00000435945 2337 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 CR383656.5-201ENST00000547616 1340 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 AL391261.1-201ENST00000555712 1479 ntBASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HDDC3Q8N4P3 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.2□□□□□ -1.42
HDDC3Q8N4P3 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms