Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
SYNE4Q8N205 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC7.53□□□□□ -1.2
SYNE4Q8N205 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC7.53□□□□□ -1.2
SYNE4Q8N205 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
SYNE4Q8N205 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
SYNE4Q8N205 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
SYNE4Q8N205 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 AL589826.1-201ENST00000340697 249 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 FAM32BP-201ENST00000344033 333 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 RNA5SP350-201ENST00000363298 111 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 BPHL-201ENST00000380368 797 ntTSL 5 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 ZSCAN12P1-201ENST00000406489 419 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 RN7SKP216-201ENST00000411050 312 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 Y_RNA.625-201ENST00000411256 107 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 AP000949.1-201ENST00000438328 629 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 RNA5SP400-201ENST00000517155 111 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 AL021368.3-201ENST00000607119 578 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 AL353684.1-201ENST00000622677 1120 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 PARP4P1-201ENST00000435945 2337 ntBASIC7.52□□□□□ -1.21
SYNE4Q8N205 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC7.52□□□□□ -1.21
SYNE4Q8N205 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SYNE4Q8N205 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE4Q8N205 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 MARK2P4-201ENST00000503381 2380 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 MIR375-201ENST00000362103 64 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 RNA5SP514-201ENST00000363717 111 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 RN7SKP128-201ENST00000364270 303 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 OR7E101P-201ENST00000400428 513 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 AL627308.1-201ENST00000435693 821 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 RN7SL799P-201ENST00000475891 298 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE4Q8N205 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE4Q8N205 AC114728.1-201ENST00000488289 483 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 AC027026.1-201ENST00000532323 742 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 AC015802.2-201ENST00000589690 189 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 AC092474.3-201ENST00000603022 568 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 SUMO2P15-201ENST00000604285 278 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 AL035661.1-201ENST00000620459 1144 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 AP002833.3-201ENST00000625075 2265 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE4Q8N205 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE4Q8N205 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE4Q8N205 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
SYNE4Q8N205 AOX3P-204ENST00000491025 2107 ntBASIC7.51□□□□□ -1.21
SYNE4Q8N205 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SYNE4Q8N205 CDY5P-201ENST00000411487 1580 ntBASIC7.5□□□□□ -1.21
SYNE4Q8N205 CDY9P-201ENST00000451397 1580 ntBASIC7.5□□□□□ -1.21
SYNE4Q8N205 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE4Q8N205 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC7.5□□□□□ -1.21
SYNE4Q8N205 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE4Q8N205 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE4Q8N205 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC7.5□□□□□ -1.21
SYNE4Q8N205 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC7.5□□□□□ -1.21
SYNE4Q8N205 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
SYNE4Q8N205 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
SYNE4Q8N205 MRPL53P1-201ENST00000414323 319 ntBASIC7.5□□□□□ -1.21
SYNE4Q8N205 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC7.5□□□□□ -1.21
SYNE4Q8N205 TRGV5P-201ENST00000419915 354 ntBASIC7.5□□□□□ -1.21
SYNE4Q8N205 RPL34P3-201ENST00000421454 338 ntBASIC7.5□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms