Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CXADRP3-202ENST00000617265 1100 ntBASIC5.65□□□□□ -1.5
LIM2P55344 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.65□□□□□ -1.5
LIM2P55344 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.65□□□□□ -1.5
LIM2P55344 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
LIM2P55344 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LIM2P55344 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
LIM2P55344 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.65□□□□□ -1.51
LIM2P55344 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.65□□□□□ -1.51
LIM2P55344 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
LIM2P55344 ST7-203ENST00000393443 2360 ntTSL 2 BASIC5.65□□□□□ -1.51
LIM2P55344 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
LIM2P55344 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.51
LIM2P55344 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.51
LIM2P55344 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.65□□□□□ -1.51
LIM2P55344 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LIM2P55344 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.65□□□□□ -1.51
LIM2P55344 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.64□□□□□ -1.51
LIM2P55344 AC110716.2-201ENST00000563865 3945 ntBASIC5.64□□□□□ -1.51
LIM2P55344 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
LIM2P55344 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 RNFT1P3-201ENST00000340898 1052 ntBASIC5.64□□□□□ -1.51
LIM2P55344 SNORD1C-201ENST00000363315 78 ntBASIC5.64□□□□□ -1.51
LIM2P55344 RNA5SP433-201ENST00000364491 114 ntBASIC5.64□□□□□ -1.51
LIM2P55344 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.64□□□□□ -1.51
LIM2P55344 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.51
LIM2P55344 RPL12P16-201ENST00000431098 498 ntBASIC5.64□□□□□ -1.51
LIM2P55344 RPS3AP38-201ENST00000435889 763 ntBASIC5.64□□□□□ -1.51
LIM2P55344 RPS7P3-201ENST00000443360 580 ntBASIC5.64□□□□□ -1.51
LIM2P55344 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.64□□□□□ -1.51
LIM2P55344 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.64□□□□□ -1.51
LIM2P55344 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.64□□□□□ -1.51
LIM2P55344 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.64□□□□□ -1.51
LIM2P55344 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.64□□□□□ -1.51
LIM2P55344 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.64□□□□□ -1.51
LIM2P55344 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.64□□□□□ -1.51
LIM2P55344 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.64□□□□□ -1.51
LIM2P55344 AC134669.1-201ENST00000581275 672 ntBASIC5.64□□□□□ -1.51
LIM2P55344 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.64□□□□□ -1.51
LIM2P55344 AP001267.4-201ENST00000602598 545 ntBASIC5.64□□□□□ -1.51
LIM2P55344 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.64□□□□□ -1.51
LIM2P55344 AC108673.3-201ENST00000609183 335 ntBASIC5.64□□□□□ -1.51
LIM2P55344 MIR6809-201ENST00000612189 116 ntBASIC5.64□□□□□ -1.51
LIM2P55344 AL021918.2-201ENST00000613415 194 ntBASIC5.64□□□□□ -1.51
LIM2P55344 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.64□□□□□ -1.51
LIM2P55344 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 CAP1P2-201ENST00000417455 1409 ntBASIC5.64□□□□□ -1.51
LIM2P55344 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
LIM2P55344 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LIM2P55344 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.63□□□□□ -1.51
LIM2P55344 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
LIM2P55344 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.63□□□□□ -1.51
LIM2P55344 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.63□□□□□ -1.51
LIM2P55344 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.63□□□□□ -1.51
LIM2P55344 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.63□□□□□ -1.51
LIM2P55344 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 AL669831.5-218ENST00000591702 1873 ntBASIC5.63□□□□□ -1.51
LIM2P55344 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 RNA5SP211-201ENST00000365516 117 ntBASIC5.63□□□□□ -1.51
LIM2P55344 AC004386.1-201ENST00000393214 761 ntBASIC5.63□□□□□ -1.51
LIM2P55344 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
LIM2P55344 KIF4CP-201ENST00000422742 1279 ntBASIC5.63□□□□□ -1.51
LIM2P55344 AC099677.3-201ENST00000427081 395 ntBASIC5.63□□□□□ -1.51
LIM2P55344 AL445928.1-201ENST00000435545 222 ntBASIC5.63□□□□□ -1.51
LIM2P55344 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.63□□□□□ -1.51
LIM2P55344 BMS1P10-201ENST00000443754 1120 ntBASIC5.63□□□□□ -1.51
LIM2P55344 CST12P-201ENST00000457644 362 ntBASIC5.63□□□□□ -1.51
LIM2P55344 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.63□□□□□ -1.51
LIM2P55344 RN7SKP288-201ENST00000516227 268 ntBASIC5.63□□□□□ -1.51
LIM2P55344 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.63□□□□□ -1.51
LIM2P55344 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.63□□□□□ -1.51
LIM2P55344 AC027369.2-201ENST00000528030 440 ntBASIC5.63□□□□□ -1.51
LIM2P55344 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
LIM2P55344 TOMM20P1-201ENST00000534518 427 ntBASIC5.63□□□□□ -1.51
LIM2P55344 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.63□□□□□ -1.51
LIM2P55344 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.63□□□□□ -1.51
LIM2P55344 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.63□□□□□ -1.51
LIM2P55344 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.63□□□□□ -1.51
LIM2P55344 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC5.63□□□□□ -1.51
LIM2P55344 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.63□□□□□ -1.51
LIM2P55344 MIR6071-201ENST00000616741 78 ntBASIC5.63□□□□□ -1.51
LIM2P55344 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.63□□□□□ -1.51
LIM2P55344 AC025262.3-201ENST00000623666 360 ntBASIC5.63□□□□□ -1.51
LIM2P55344 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
LIM2P55344 EPS15P1-202ENST00000459691 2071 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms