Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SMARCA1P28370 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
SMARCA1P28370 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
SMARCA1P28370 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC7.13□□□□□ -1.27
SMARCA1P28370 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC7.13□□□□□ -1.27
SMARCA1P28370 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC7.13□□□□□ -1.27
SMARCA1P28370 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 AL359976.1-201ENST00000418655 3528 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
SMARCA1P28370 TMA16P2-201ENST00000413187 601 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 AL357078.2-201ENST00000416486 427 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 RPL35AP31-201ENST00000418340 337 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC7.13□□□□□ -1.27
SMARCA1P28370 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
SMARCA1P28370 VN1R48P-201ENST00000448149 1036 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC7.13□□□□□ -1.27
SMARCA1P28370 AC135999.1-201ENST00000478962 479 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 RN7SL170P-201ENST00000487098 295 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC7.13□□□□□ -1.27
SMARCA1P28370 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC7.13□□□□□ -1.27
SMARCA1P28370 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC7.13□□□□□ -1.27
SMARCA1P28370 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC7.13□□□□□ -1.27
SMARCA1P28370 IGKV3D-25-201ENST00000519599 235 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
SMARCA1P28370 OR4A40P-201ENST00000533878 948 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC7.13□□□□□ -1.27
SMARCA1P28370 OLR1-210ENST00000544577 924 ntTSL 5 BASIC7.13□□□□□ -1.27
SMARCA1P28370 CR383656.14-201ENST00000551951 406 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC7.13□□□□□ -1.27
SMARCA1P28370 STARD6-202ENST00000577499 696 ntTSL 2 BASIC7.13□□□□□ -1.27
SMARCA1P28370 OOSP1P2-201ENST00000579644 351 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 GLYATL1P2-202ENST00000588046 902 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC7.13□□□□□ -1.27
SMARCA1P28370 AC022106.1-201ENST00000612834 766 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 AL137246.2-201ENST00000613439 662 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 AP001885.1-201ENST00000621658 558 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC7.13□□□□□ -1.27
SMARCA1P28370 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC7.13□□□□□ -1.27
SMARCA1P28370 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 AC022034.1-201ENST00000512867 2156 ntBASIC7.13□□□□□ -1.27
SMARCA1P28370 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SMARCA1P28370 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 AL132656.3-201ENST00000606384 1595 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC7.12□□□□□ -1.27
SMARCA1P28370 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC7.12□□□□□ -1.27
SMARCA1P28370 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC7.12□□□□□ -1.27
SMARCA1P28370 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 RNU6-670P-201ENST00000364312 104 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 RNU105B-201ENST00000364478 208 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC7.12□□□□□ -1.27
SMARCA1P28370 RNA5SP156-201ENST00000410250 110 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC7.12□□□□□ -1.27
SMARCA1P28370 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 PSMD10P2-201ENST00000432890 672 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC7.12□□□□□ -1.27
SMARCA1P28370 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC7.12□□□□□ -1.27
SMARCA1P28370 AL022319.1-201ENST00000458183 1167 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC7.12□□□□□ -1.27
SMARCA1P28370 ATG10-AS1-201ENST00000504846 648 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 AC008628.1-201ENST00000508663 265 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 AC106806.2-201ENST00000509365 500 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 PRMT5P1-201ENST00000514351 598 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC7.12□□□□□ -1.27
SMARCA1P28370 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC7.12□□□□□ -1.27
SMARCA1P28370 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC7.12□□□□□ -1.27
SMARCA1P28370 AC012414.2-201ENST00000559474 187 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 AC002310.3-201ENST00000569728 723 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC7.12□□□□□ -1.27
SMARCA1P28370 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC7.12□□□□□ -1.27
SMARCA1P28370 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC7.12□□□□□ -1.27
SMARCA1P28370 AC098483.2-201ENST00000603158 454 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 AC096861.1-201ENST00000616652 240 ntBASIC7.12□□□□□ -1.27
SMARCA1P28370 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC7.12□□□□□ -1.27
SMARCA1P28370 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SMARCA1P28370 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms