Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC6.67□□□□□ -1.34
BDNFP23560 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.67□□□□□ -1.34
BDNFP23560 RFESDP1-201ENST00000422350 461 ntBASIC6.67□□□□□ -1.34
BDNFP23560 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.67□□□□□ -1.34
BDNFP23560 RPSAP65-201ENST00000429660 595 ntBASIC6.67□□□□□ -1.34
BDNFP23560 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC6.67□□□□□ -1.34
BDNFP23560 RPL5P7-201ENST00000444235 813 ntBASIC6.67□□□□□ -1.34
BDNFP23560 REG1CP-206ENST00000447469 496 ntBASIC6.67□□□□□ -1.34
BDNFP23560 CCRL1P1-201ENST00000449542 1053 ntBASIC6.67□□□□□ -1.34
BDNFP23560 VN1R38P-201ENST00000450265 887 ntBASIC6.67□□□□□ -1.34
BDNFP23560 RN7SL326P-201ENST00000477493 296 ntBASIC6.67□□□□□ -1.34
BDNFP23560 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.67□□□□□ -1.34
BDNFP23560 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.67□□□□□ -1.34
BDNFP23560 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC6.67□□□□□ -1.34
BDNFP23560 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.67□□□□□ -1.34
BDNFP23560 AP003080.1-202ENST00000526526 915 ntBASIC6.67□□□□□ -1.34
BDNFP23560 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BDNFP23560 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.67□□□□□ -1.34
BDNFP23560 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC6.67□□□□□ -1.34
BDNFP23560 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC6.67□□□□□ -1.34
BDNFP23560 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC6.67□□□□□ -1.34
BDNFP23560 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BDNFP23560 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.67□□□□□ -1.34
BDNFP23560 AL499605.1-201ENST00000604628 403 ntBASIC6.67□□□□□ -1.34
BDNFP23560 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.67□□□□□ -1.34
BDNFP23560 RMST_5.1-201ENST00000618704 126 ntBASIC6.67□□□□□ -1.34
BDNFP23560 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.67□□□□□ -1.34
BDNFP23560 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BDNFP23560 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
BDNFP23560 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.67□□□□□ -1.34
BDNFP23560 AL133243.2-201ENST00000610331 1621 ntBASIC6.67□□□□□ -1.34
BDNFP23560 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.67□□□□□ -1.34
BDNFP23560 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BDNFP23560 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.67□□□□□ -1.34
BDNFP23560 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BDNFP23560 IFIT1P1-201ENST00000400497 1449 ntBASIC6.67□□□□□ -1.34
BDNFP23560 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BDNFP23560 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BDNFP23560 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC6.66□□□□□ -1.34
BDNFP23560 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.66□□□□□ -1.34
BDNFP23560 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 AC022905.1-201ENST00000503430 3048 ntBASIC6.66□□□□□ -1.34
BDNFP23560 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 RNA5SP350-201ENST00000363298 111 ntBASIC6.66□□□□□ -1.34
BDNFP23560 RNU4-7P-201ENST00000364758 141 ntBASIC6.66□□□□□ -1.34
BDNFP23560 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 RN7SKP121-201ENST00000410842 305 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.66□□□□□ -1.34
BDNFP23560 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.66□□□□□ -1.34
BDNFP23560 NPM1P26-201ENST00000426339 738 ntBASIC6.66□□□□□ -1.34
BDNFP23560 GAPDHP34-201ENST00000432112 823 ntBASIC6.66□□□□□ -1.34
BDNFP23560 PSMD10P2-201ENST00000432890 672 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AC007679.3-201ENST00000434035 414 ntBASIC6.66□□□□□ -1.34
BDNFP23560 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 AL590004.3-202ENST00000445883 451 ntBASIC6.66□□□□□ -1.34
BDNFP23560 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.66□□□□□ -1.34
BDNFP23560 AC007386.1-201ENST00000455212 582 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC6.66□□□□□ -1.34
BDNFP23560 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.66□□□□□ -1.34
BDNFP23560 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.66□□□□□ -1.34
BDNFP23560 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 AC068522.1-201ENST00000482895 345 ntBASIC6.66□□□□□ -1.34
BDNFP23560 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC6.66□□□□□ -1.34
BDNFP23560 AC023818.1-201ENST00000498379 384 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.66□□□□□ -1.34
BDNFP23560 RN7SKP70-201ENST00000516655 271 ntBASIC6.66□□□□□ -1.34
BDNFP23560 SNORA81.2-201ENST00000516868 170 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AC002519.2-203ENST00000567043 837 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.66□□□□□ -1.34
BDNFP23560 MRPS21P8-201ENST00000569196 235 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 AP005136.2-201ENST00000583253 1049 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.66□□□□□ -1.34
BDNFP23560 AL080312.2-201ENST00000613001 630 ntBASIC6.66□□□□□ -1.34
BDNFP23560 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.66□□□□□ -1.34
BDNFP23560 MIR6071-201ENST00000616741 78 ntBASIC6.66□□□□□ -1.34
BDNFP23560 MIR7159-201ENST00000620587 66 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AC012254.5-201ENST00000623573 478 ntBASIC6.66□□□□□ -1.34
BDNFP23560 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC6.66□□□□□ -1.34
BDNFP23560 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.66□□□□□ -1.34
BDNFP23560 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
BDNFP23560 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
BDNFP23560 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
BDNFP23560 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.66□□□□□ -1.34
BDNFP23560 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.65□□□□□ -1.34
BDNFP23560 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC6.65□□□□□ -1.34
BDNFP23560 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms