Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.64□□□□□ -1.51
SDC1P18827 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.64□□□□□ -1.51
SDC1P18827 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.64□□□□□ -1.51
SDC1P18827 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SDC1P18827 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.63□□□□□ -1.51
SDC1P18827 RPL35AP3-201ENST00000414680 288 ntBASIC5.63□□□□□ -1.51
SDC1P18827 AC108479.1-201ENST00000431142 427 ntBASIC5.63□□□□□ -1.51
SDC1P18827 AL445466.1-201ENST00000448432 357 ntBASIC5.63□□□□□ -1.51
SDC1P18827 RPL12P39-201ENST00000455456 496 ntBASIC5.63□□□□□ -1.51
SDC1P18827 AC113367.2-201ENST00000505749 160 ntBASIC5.63□□□□□ -1.51
SDC1P18827 AC108103.1-201ENST00000511286 446 ntBASIC5.63□□□□□ -1.51
SDC1P18827 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.63□□□□□ -1.51
SDC1P18827 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.63□□□□□ -1.51
SDC1P18827 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 AL121594.2-201ENST00000541658 472 ntBASIC5.63□□□□□ -1.51
SDC1P18827 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.63□□□□□ -1.51
SDC1P18827 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.63□□□□□ -1.51
SDC1P18827 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 TXNP4-201ENST00000575018 310 ntBASIC5.63□□□□□ -1.51
SDC1P18827 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.63□□□□□ -1.51
SDC1P18827 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.63□□□□□ -1.51
SDC1P18827 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SDC1P18827 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.63□□□□□ -1.51
SDC1P18827 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.63□□□□□ -1.51
SDC1P18827 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 AC130360.2-201ENST00000533477 1556 ntBASIC5.63□□□□□ -1.51
SDC1P18827 AL355834.1-201ENST00000556602 3965 ntBASIC5.63□□□□□ -1.51
SDC1P18827 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SDC1P18827 AC008627.1-201ENST00000517511 1704 ntBASIC5.62□□□□□ -1.51
SDC1P18827 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
SDC1P18827 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SDC1P18827 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SDC1P18827 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SDC1P18827 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SDC1P18827 AC012254.3-201ENST00000591183 2117 ntBASIC5.62□□□□□ -1.51
SDC1P18827 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.62□□□□□ -1.51
SDC1P18827 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.62□□□□□ -1.51
SDC1P18827 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SDC1P18827 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SDC1P18827 MIR191-201ENST00000384873 92 ntBASIC5.62□□□□□ -1.51
SDC1P18827 RPS4XP5-201ENST00000419038 768 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 AK3P5-201ENST00000432033 519 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 BTG3P1-201ENST00000435859 716 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AC096775.1-201ENST00000437724 448 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AL353662.1-201ENST00000439099 327 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.62□□□□□ -1.51
SDC1P18827 AC007383.1-201ENST00000445875 636 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 AC004129.2-201ENST00000457229 287 ntBASIC5.62□□□□□ -1.51
SDC1P18827 RN7SL269P-201ENST00000467795 305 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AC023245.1-201ENST00000468501 517 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.62□□□□□ -1.51
SDC1P18827 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 EIF4EP5-201ENST00000528228 640 ntBASIC5.62□□□□□ -1.51
SDC1P18827 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.62□□□□□ -1.51
SDC1P18827 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.62□□□□□ -1.51
SDC1P18827 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 AL163952.1-202ENST00000569625 600 ntBASIC5.62□□□□□ -1.51
SDC1P18827 GARSP1-201ENST00000570895 719 ntBASIC5.62□□□□□ -1.51
SDC1P18827 RN7SL230P-201ENST00000580835 303 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 AL133481.2-203ENST00000607558 139 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AL021918.2-201ENST00000613415 194 ntBASIC5.62□□□□□ -1.51
SDC1P18827 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AL031658.2-201ENST00000616850 651 ntBASIC5.62□□□□□ -1.51
SDC1P18827 FAM27E2-201ENST00000619668 403 ntBASIC5.62□□□□□ -1.51
SDC1P18827 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC5.62□□□□□ -1.51
SDC1P18827 AC009120.7-201ENST00000623452 780 ntBASIC5.62□□□□□ -1.51
SDC1P18827 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.62□□□□□ -1.51
SDC1P18827 FBXL21-201ENST00000297158 1305 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms